KEGG   Xiphophorus couchianus (Monterrey platyfish): 114142313
Entry
114142313         CDS       T05908                                 
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
  KO
K10877  DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114142313 (rad54b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xco03400]
    114142313 (rad54b)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     114142313 (rad54b)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII HDA2-3 Nodulin_C
Other DBs
NCBI-GeneID: 114142313
NCBI-ProteinID: XP_027869334
LinkDB
Position
3:16033539..16051229
AA seq 936 aa
MRRSGAPSQLLGNAVKKPRFVPPGASASCPVEESKPLAPKRGLGNALAKVQRSLSAAVVN
KSTCSVPGQTGQTASGLSKVLARVLTATESKENEDEAKYEDCTEDVNVSAGVDGGPQWTH
ASPQTPQPPADSPHVSGAAGPDRVRYFSVVWCKASKKKHKRWEGDAVLVARGRTVVLKDM
EGKDIGKGSGYKVSELASLSEGETLMIGGKEIEVMGIVSAEDFAKGRCFQEVQTDQEELH
TKAAPPPPRRFNPKPFCPPTMLGRAGHPENKPQAEQTSKPRHDPLAPGALVMPRPSANHQ
WLHNKSGLPVVDVVVDPHLTMHLRPHQREGILFLYECVMGMRAAGRHGAILADEMGLGKT
LQSVALCWTVLKQGPYGGKPVAKRVLVVTPGSLVQNWRAEFTKWLGRERISAFTVDQDHR
IEEFLSSPLHNVLVISYEMLLRCLDPIQKVEFGLIICDEGHRLKNSSIKTSSAVSSLSCH
RRVILTGTPVQNDLQEFYAIIEFVNPGILGSTTAYRKVYEEPILHSRQPSCSEDERVLGE
ERAAELSRLTGMFILRRTQEIINRYLPPRLDWTLFCMPSPLQQKLYKHLLCHRVFRACLQ
GFTQGGAHLACITALKKLCNHPGLLHDTVKERTERGSVESSLYEGLADLFPESYCSAGFD
TADSGKLLVLSDLLSAIRQLSPSDRVVLVSNYTQTLDLLQDLCVCSGFTFCRLDGQTPTS
QRQRLVDAFNSPYSQSFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRD
GQKKTVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKAAEHTSFSTSELRDLFSLTD
TPCLTHDLLSCSCSMDGSVNDVEVEEVELVSDRPCQLGRQGDRRGAAQKHLSMSELMRWR
HFSGDTHTFSDPYLDHARSHITFAFQTTISHTPSEQ
NT seq 2811 nt   +upstreamnt  +downstreamnt
atgcgacgctcaggagctcccagtcagcttttgggcaatgctgtgaaaaaacctcgcttt
gtgccaccaggagcatctgcttcatgtcctgtggaagaatcaaagcctctagcccctaaa
cgtggcttgggaaatgctctggctaaagtccagagaagtctttcagcagcggttgtgaat
aaatcaacctgcagtgttcccggtcaaacaggccagactgcttcaggtttgtccaaggtg
ctggcccgtgttctcactgcaacagagagtaaagaaaatgaggacgaggcaaaatatgaa
gactgtacagaggacgtaaatgtttctgcaggagtagatggaggcccccagtggacccac
gcgtctcctcaaacccctcagcctcctgcagattcacctcatgtctctggagctgcaggc
ccagacagagtccgatacttcagtgtggtttggtgtaaagccagcaaaaagaaacacaag
cgctgggagggagacgctgtgctggttgccagagggcgaacagtcgtactcaaagacatg
gaggggaaggatattggaaagggtagtggctacaaggtgtcagagctggcctcgctgtct
gagggagagacgctgatgataggagggaaggagatagaggtgatgggcatcgtctctgct
gaggactttgccaaaggtcgttgtttccaggaggttcaaacagatcaagaggaactgcac
actaaggctgctccacctcctcctcgccgcttcaaccccaaacctttctgccccccaaca
atgttgggcagagcaggacatccagaaaataaaccacaagcggagcaaaccagcaaacct
cgtcatgacccgctagctccaggtgccttagtgatgcctcgcccctctgccaaccaccag
tggcttcataacaagtcgggccttcctgtggtcgacgtcgtcgttgacccacacctgacc
atgcacctgcgaccccaccagagggagggcatcctcttcctctatgagtgtgttatgggc
atgagagctgcaggtcgtcatggcgccatcctggcggatgagatggggcttgggaagacg
ctgcagagcgtggcgctctgctggacggtgcttaagcagggaccttacggcgggaaacca
gtcgcaaagcgtgtccttgtggtcactcctggcagcctcgtgcagaactggagagcagag
ttcaccaagtggctcggccgggaacggatcagtgccttcactgtggatcaggaccacagg
atagaggagtttttatcctcccctctccacaacgttctggtgatcagctatgagatgctg
ctgcggtgcctggacccgatccagaaagtggagtttggtctcataatttgcgatgagggt
cacagactgaagaacagcagcatcaaaacgtcctccgccgtcagcagcctcagctgtcat
cgcagagttatactcacagggaccccagtccaaaatgacctgcaggagttctacgccatc
atagagtttgtgaacccgggaattcttggttcgaccactgcttatagaaaagtttatgaa
gaaccaattctacactccagacagccatcctgctctgaggacgaaagagttttgggggaa
gagcgcgccgctgaactctctcgtctcaccggcatgttcatcttgcggcggacgcaggag
attatcaaccgctacttgccgcctcgtctggactggaccttgttctgcatgccgtcgccg
ctgcagcagaagctgtacaaacacctgctctgccaccgcgtcttcagagcctgcctgcag
ggcttcacacaaggcggcgcacacctggcctgcatcactgcgctgaagaagctctgcaac
catcctggcttgctccacgacactgtcaaggagagaacagagcgcggatctgtggagagc
tctttgtacgagggacttgcagatctcttcccagaatcctattgttcagcaggattcgac
accgctgactccgggaaacttttagttctgtccgacctgctgagtgccatcaggcagctc
agcccttcagaccgggtggtcctggtgtcaaactacacccagactttggacttgcttcag
gacctgtgtgtttgttccggcttcacgttctgccggctcgacggtcagacgcccacgagc
cagcggcagcggctggtcgacgccttcaacagcccctactctcagagcttcctgtttctg
ctgagctccaaagcaggcggtgtgggactgaatctgatcggagcgtcgcacctggtgctg
tacgacatcgactggaaccccgccaatgacattcaggccatggctcgggtatggagagat
ggacagaaaaagacggtgcacatttaccgtctcctcactgcaggcactattgaggagcgt
atatttcagagacaggtgtccaaacaggggctgtccgggactgtggttgacttggggaaa
gcagcagaacacacaagcttctccaccagcgagctgcgagatcttttcagcctgacggac
acgccgtgtttgacccatgacctgctgagctgcagctgcagcatggacggctcggtcaac
gacgtggaggtggaggaggtggagcttgtttctgacaggccgtgccagctcggtcgtcag
ggcgaccgcaggggggcggcacagaagcatctcagcatgtcggagctcatgcggtggaga
cacttctccggtgacacacacaccttctcagacccttaccttgatcatgcacgaagccac
atcaccttcgccttccagaccaccatctcccacacacccagcgaacagtga

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114150382
Entry
114150382         CDS       T05908                                 
Symbol
rad54l
Name
(RefSeq) DNA repair and recombination protein RAD54-like
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114150382 (rad54l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xco03400]
    114150382 (rad54l)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     114150382 (rad54l)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 Rad54_N
Other DBs
NCBI-GeneID: 114150382
NCBI-ProteinID: XP_027882558
LinkDB
Position
9:complement(813924..835192)
AA seq 739 aa
MRRSLAPSELAKRKPAGEACGDGGNTGNTEKRRKVDGMRESHISPYRKPLTQLNNWPGCM
EADRHESFIRSILSKPFKIPIPNYTGSLGSKALGLKHAGVRKSLHDPFAEDALVLYEPPT
LSAHDLIKADKEKLPVHVVVDPVLGKVLRPHQREGVKFLWDCVTGRRIPGSYGCIMADEM
GLGKTLQCITLMWTLLRQSLNAKPEINKAIVVSPSSLVRNWYNEVGKWLGGRISPVAIDG
GSKEDIDKQLVNFISQHGLKVATPILIISYETFRLHADVLHRGKVGLVICDEGHRLKNAD
NQTYQALHSMNAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQEFKKRFELPILKGR
DADASNRDREEGEEKLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCKLTPLQTELYM
RFLKQAKPTETLREGRINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFEGALHLFPPGY
SAKVLEPQLSGKMVTLDYILAVTRSTTGDKVVLVSNYTQTLDLFEKLCRFRRYLYVRLDG
TMSIKKRAKIVEKFNSPQNPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA
RVWRDGQKKTCYIYRLISTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGQLRELF
TLNEETASDTHDKFHCCRCVNGREVRLPPEGADCTSDLSQWNHCFDKKGLRDQVLKASWN
SAVSFVFHQRSHEDQKGVV
NT seq 2220 nt   +upstreamnt  +downstreamnt
atgaggaggagcctggctcccagtgagctggctaaacgcaaaccagccggtgaggcctgc
ggagacggggggaacacaggaaacaccgagaagagaaggaaagtggatgggatgagggag
agtcacatttctccctacaggaagcctctgacacaacttaacaactggcctggatgcatg
gaagctgacagacatgagtcatttatccgaagcattctctccaagccttttaaaattccc
attcccaattacacaggttcactaggaagcaaagcacttggcctaaagcatgcaggagta
aggaaatcgctccatgatccatttgcagaagatgctttggttctttatgagccgccgact
ctgagtgctcatgatctgatcaaagctgacaaggaaaagcttccagttcatgttgttgtg
gatccagtattgggaaaagttctcagaccgcatcagagagagggagtgaagttcctttgg
gactgtgtgactggcagacgcatccctggatcctacggctgcatcatggctgatgagatg
gggctgggaaagactttgcagtgtatcactctcatgtggaccttgctacgccagagcctt
aatgccaagccagagataaacaaggccattgtggtttcaccttctagtctggttcgaaac
tggtataatgaagtaggaaagtggcttggaggtcgcatttcaccagtggcaatcgatggg
ggctcaaaggaggatattgataagcagctcgtgaacttcatctctcagcatggtttgaaa
gtagcaacacccatcctgatcatttcttatgagacatttcgacttcatgctgatgtcctg
cacaggggcaaagttggactcgtgatctgtgacgaggggcatcgactgaagaatgctgac
aaccagacttaccaagctctgcattctatgaatgcccagcggagagttctgatatcaggc
actccaatccagaacgacctgctggagtatttcagtctggtccattttgtgaatgctgga
atccttggtactgcccaggagtttaagaagcgatttgagcttcccattctgaagggtaga
gatgcagacgccagtaacagagacagagaggaaggagaagaaaaactcaaggaactcatc
agcattgtcaacaggtgtttgattaggagaacatcggatatcctgtcaaagtatcttcct
gtgaaaattgagcaagttgtgtgctgcaaactaactccgttgcagacagaactgtacatg
cgctttttgaagcaggccaaacccacagagacattgcgagaaggcagaatcaatgtctcc
tcactgtcttctatcacatctctcaagaagctgtgtaatcacccagctctcatttatgat
aagtgtgttgaagaagaggagggcttcgagggcgcgctccatctgtttcctcctggttac
tccgctaaagtactcgaacctcagctgtctggtaaaatggtgactctcgactacattttg
gctgtgacgagatctacaactggtgacaaagtggtgctggtctccaactatactcaaaca
ctggacctctttgaaaagttgtgcagatttagaaggtacctctatgttagactggacggc
acaatgtctatcaagaaaagggctaagatcgtggaaaaattcaacagtccccaaaaccct
gaatttattttcatgctgagcagcaaggcgggtggatgtggcctcaatctgattggtgcc
aatcgcttggtaatgtttgatccagactggaacccagccaatgatgagcaggcaatggct
cgagtgtggagagatggccagaagaagacctgttacatctacagactgatctctactgga
accattgaggagaagatcctgcagagacaagcccataaaaaagccctgagcagctgtgtg
gtggatgaggagcaggatgtggagcgtcatttttctctaggccaacttagagaactcttc
acactcaatgaagaaactgccagtgatacacatgacaagtttcactgctgtcgctgtgta
aatggcagagaggttcgactgcctccagaaggtgccgactgtaccagtgacctttcccag
tggaaccactgctttgacaagaagggactgagggaccaagtgctgaaagcctcctggaac
agtgctgtctcctttgtctttcatcaacgctctcatgaggatcagaagggtgttgtatga

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