Xiphophorus couchianus (Monterrey platyfish): 114142721
Help
Entry
114142721 CDS
T05908
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
xco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114142721 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
114142721 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114142721 (ercc3)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114142721 (ercc3)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
114142721 (ercc3)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114142721 (ercc3)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114142721 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
114142721
NCBI-ProteinID:
XP_027869935
LinkDB
All DBs
Position
4:complement(23175316..23186609)
Genome browser
AA seq
783 aa
AA seq
DB search
MGKRDKGDREKKSKKRYYEEEDDEDDVTGSEPQEAIPAAAGKQVDESGTKLDEYGAKDYR
TQMQLKKDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQHLLQDNLIRECRLRGADGSDPELITEVIHSKSAISKAVQDKGGTSTSQQPIDGQTS
NQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAEKVMEWMRSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPFIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQQQLLQKVLAAS
DLDAEEEVVAGEVGARPQFSRRVGTMSSMSGADDTVYMEYQSRSNKASAGSKSVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagggataaaggagatagagagaagaaatccaagaaacgttactatgaggag
gaagatgatgaagatgacgtgaccggcagcgagcctcaggaagccataccagctgctgca
ggaaagcaggtggacgagtctgggacaaagctcgacgagtatggagccaaagactaccgc
actcagatgcagctcaagaaagaccattcttcacgcccactctgggtggctccagatgga
cacatctttctggaagcgttctctccggtgtataagtatgctcaggatttcttagtggcc
atcgcagagcctgtgtgcagacctaaccacgttcatgagtacaagctgaccgcgtactcg
ctctacgcagcggtcagtgtggggctgcagacttcagatatcgtggagtacctgcagaag
ctcagcaaaacatctgtaccggatggcattgtgcagtttatcaaactttgcactgtgagc
tatgggaaagtcaagctcgtgcttaagcacaacaggtattttgtagaaagtgctttccct
gatgtcatccagcatctcctgcaggacaacttgatccgtgaatgtcgcctgcgcggtgcc
gacggatcggaccctgagctcattactgaggtcatccacagcaagtcagcgatttctaag
gctgtccaggacaaaggaggtacctccacctcacagcagcccatcgatggacaaacctcg
aaccagcaggtccccgaggacatcttcagctactatgagcagatggataaagaggaagaa
gaggaagaggagactcagacggtgtcttttgaaattcgccaggaaatgatagaggagctg
cagaagcgttgtattcagctggagtaccccctcctagctgagtacgactttcgaaatgac
accgtcaaccctgacatcaacattgacctgaagcccaccgccgtgctgcggccctaccag
gagaagagcctgcgcaagatgtttggaaacggccgagcacgatcgggagtgatagtgctg
ccctgcggagcaggcaaatctctggtgggtgtgaccgccgcgtgcaccgtgcgtaaacgg
tgcctggtgctgggtaactcctctgtctctgtggagcagtggaaggcccagttcaagatg
tggtccaccatcgacgactcccagatctgccgcttcacctccgacgccaaggacaagccc
attggctgctcagtggccatcagcacctactccatgttgggtcacaccaccaagcgatcc
tgggaggcagagaaggtcatggaatggatgcggtcgcaggagtggggacttatgatcctg
gatgaggtccacaccatccctgcaaagatgtttcgacgtgtcctgaccatcgtccaggcc
cattgcaaactgggactcaccgccacactggtgagggaagacgacaagattgtggatctc
aacttccttattggtcctaaactgtatgaagccaactggatggagctgcagaacaacggt
tatatcgccaaagttcagtgtgcagaggtgtggtgcccgatgtccccggagttttacaga
gagtacgtggccattaagacaaagaagcgcattctgctgtacacgatgaaccccaacaag
tttcgggcctgccagtttctcatccgcttccatgagcggcgcaatgacaagattatcgtc
tttgctgacaacgtctttgccttgaaggaatacgccattcggctcaacaagcctttcatc
tatggtcccacttctcaaggggaacgaatgcagattttgcagaactttaaacacaatcca
aagatcaacaccattttcatctctaaggttggagacacttctttcgacttgccagaagcc
aatgttctgatccagatctcctcccatggtggctcgcgcagacaggaggcacagagactt
ggcagagtcttaagagccaagaaaggaatggtggctgaggagtacaatgcatacttttat
tccctggtctctcaggacacccaggaaatggcttattccacaaagaggcagagattcctt
gtggatcagggatacagcttcaaggtaattacaaagttagcaggtatggaggaagaggac
ctgatgttctccagcagagaggaacagcagcagctgctgcagaaggtgctcgctgcttca
gacctggatgctgaggaggaagtagtagcaggcgaagtgggagcacgaccacagttttcc
cggcgagtgggcaccatgagctccatgtcgggtgcagacgacacggtctacatggaatat
caaagcaggagcaacaaagcctctgcggggagcaagagcgttcacccactattcaagcgc
ttcagaaagtag
DBGET
integrated database retrieval system
