Xiphophorus couchianus (Monterrey platyfish): 114144947 Help Entry 114144947         CDS       T05908                                  Symbol pold4 Name (RefSeq) DNA polymerase delta subunit 4   KO K03505   DNA polymerase delta subunit 4 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03030   DNA replication xco03410   Base excision repair xco03420   Nucleotide excision repair xco03430   Mismatch repair xco03440   Homologous recombination Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     114144947 (pold4)    03410 Base excision repair     114144947 (pold4)    03420 Nucleotide excision repair     114144947 (pold4)    03430 Mismatch repair     114144947 (pold4)    03440 Homologous recombination     114144947 (pold4)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xco03032]     114144947 (pold4)    03400 DNA repair and recombination proteins [BR:xco03400]     114144947 (pold4) DNA replication proteins [BR:xco03032]  Eukaryotic type   DNA Replication Elongation Factors    DNA polymerase delta complex     114144947 (pold4) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      DNA polymerase delta complex       114144947 (pold4)    MMR (mismatch excision repair)     DNA polymerase delta complex      114144947 (pold4) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_pol_delta_4 Motif Other DBs NCBI-GeneID:  114144947 NCBI-ProteinID:  XP_027874013 LinkDB All DBs Position 5:6036354..6040686 Genome browser AA seq 108 aa AA seqDB search MTTKRGLITDSFKVMKKSRRGGKRKKSPTPPPAQQEDVTTPAREEEMQQLKQFDLDWRFG PCTGISRMQRWERAKLHGLNPPEEIKDLLLQTHDDPEYSMSLWREYPI NT seq 327 nt NT seq  +upstreamnt  +downstreamnt atgacaacaaaacgtggactgataaccgattcatttaaagtgatgaagaagtcaaggaga gggggaaagcgaaagaagagtcccacgcctcctccagcacagcaagaagatgtcactaca cctgccagagaggaggagatgcagcagctcaaacagtttgacctggactggagatttggg ccctgcacaggcattagcaggatgcagaggtgggagagagcgaagcttcatggcctgaac ccacctgaggaaatcaaagatctgctgctgcaaacacacgatgatcccgagtactccatg agcctctggagagaatatcctatctga

Xiphophorus couchianus (Monterrey platyfish): 114147227 Help Entry 114147227         CDS       T05908                                  Symbol pold3 Name (RefSeq) DNA polymerase delta subunit 3 isoform X1   KO K03504   DNA polymerase delta subunit 3 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03030   DNA replication xco03410   Base excision repair xco03420   Nucleotide excision repair xco03430   Mismatch repair xco03440   Homologous recombination Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     114147227 (pold3)    03410 Base excision repair     114147227 (pold3)    03420 Nucleotide excision repair     114147227 (pold3)    03430 Mismatch repair     114147227 (pold3)    03440 Homologous recombination     114147227 (pold3)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:xco01009]     114147227 (pold3)   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xco03032]     114147227 (pold3)    03400 DNA repair and recombination proteins [BR:xco03400]     114147227 (pold3) Protein phosphatases and associated proteins [BR:xco01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      114147227 (pold3) DNA replication proteins [BR:xco03032]  Eukaryotic type   DNA Replication Elongation Factors    DNA polymerase delta complex     114147227 (pold3) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      DNA polymerase delta complex       114147227 (pold3)    MMR (mismatch excision repair)     DNA polymerase delta complex      114147227 (pold3) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  CDC27 Motif Other DBs NCBI-GeneID:  114147227 NCBI-ProteinID:  XP_027877633 LinkDB All DBs Position 6:25173916..25179127 Genome browser AA seq 438 aa AA seqDB search MDELYLDNIDEYVNDHNKIVTYKWLSLTLGVHVNTAKQMLYHYLEHKRKESSPQLHATYL VSGKLEDKGQMCHKVSVVREDQLEDFKSKMSLIVSVHVYSVQKALLKDSGPLYSVDYDAI KDNLKNCSRYSAIRCARAVPMSAAELQQVQEIQRAPPSAPENKKSAMNGDANIASKPSSK PQKGIMGMFANKSAPKNQDNSKDVKPEPKEESPVPEAPKTKPAAKSSPMANFFGTQTKKP EKPVEKQQEAQLAIASEQQHQRTTAEEPAAVQLHKETKADSGSKTKRMEESDSEEEKMEK KKRRRIKKPQPDSSDEDVIPDSPPQMKTSEPSPKKEPETVQHSHMSSGTKIRRRRKVLKS RTFKDEEGCIVTEKDYVSESYSETEDDFQSTKQAPRNNNKAKPTSSSKDDDKKTQKKSSA SSNKGSKQASIMGFFQKK NT seq 1317 nt NT seq  +upstreamnt  +downstreamnt atggacgagctttatttggataatattgacgaatatgtcaacgatcacaacaaaatagta acctataagtggctcagtctgactctcggagtccatgttaacacagctaaacagatgctt taccattacttggagcacaagaggaaggagagctcacctcagctccacgccacatacctc gtgtctgggaaacttgaggacaaaggtcaaatgtgtcacaaggtgtctgttgtcagagaa gaccaattggaagatttcaaatccaaaatgagtttgatagtgagcgttcatgtctacagc gtccagaaagctttgctcaaagacagcggccccctctacagcgtcgactacgatgccatt aaagacaacctgaagaattgcagcagatacagcgcgatccgatgtgccagagcggtgccc atgtctgcagcggagctgcagcaggtccaggaaatccaacgagctcctccatcagcgcct gaaaataaaaagtccgccatgaacggagatgccaacattgcctccaaaccatcaagcaag ccgcagaaaggcatcatgggaatgtttgcaaataaatctgcacccaaaaatcaggataac agcaaagacgtcaagcctgaacccaaagaagaatctcctgtgccagaggctccaaaaacc aaaccagcagcgaagtccagtccgatggccaacttctttggaactcaaacaaaaaaacca gagaaacctgtggagaagcagcaggaggctcagttggccatcgcatcagagcagcagcat cagagaacgacagcggaggaacctgcagccgtgcagctgcacaaagaaaccaaagcagac tccgggagcaaaacaaagcgaatggaagagtctgatagcgaggaggagaaaatggagaaa aagaagaggcgaaggatcaagaaaccacaaccagacagcagcgatgaagacgttattcca gattctccacctcagatgaaaacaagcgagccgagtcctaaaaaggagcctgagactgtc caacattcacatatgagctctggaaccaaaataaggaggaggagaaaagtcctgaagtca cgtacctttaaggatgaggaaggatgcattgtaacagaaaaagattacgtgagcgaatct tactctgagacagaggatgactttcagagcaccaaacaagctccacgtaacaacaataaa gcaaagccaacgtcgagcagcaaagacgacgacaaaaagactcagaagaaatcatcagca agctcaaataaaggaagtaaacaagcttccattatgggattcttccaaaagaaatga

Xiphophorus couchianus (Monterrey platyfish): 114154082 Help Entry 114154082         CDS       T05908                                  Symbol pold2 Name (RefSeq) DNA polymerase delta subunit 2   KO K02328   DNA polymerase delta subunit 2 Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03030   DNA replication xco03410   Base excision repair xco03420   Nucleotide excision repair xco03430   Mismatch repair xco03440   Homologous recombination Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     114154082 (pold2)    03410 Base excision repair     114154082 (pold2)    03420 Nucleotide excision repair     114154082 (pold2)    03430 Mismatch repair     114154082 (pold2)    03440 Homologous recombination     114154082 (pold2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xco03032]     114154082 (pold2)    03400 DNA repair and recombination proteins [BR:xco03400]     114154082 (pold2) DNA replication proteins [BR:xco03032]  Eukaryotic type   DNA Replication Elongation Factors    DNA polymerase delta complex     114154082 (pold2) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      DNA polymerase delta complex       114154082 (pold2)    MMR (mismatch excision repair)     DNA polymerase delta complex      114154082 (pold2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_pol_E_B DNA_pol_D_N Motif Other DBs NCBI-GeneID:  114154082 NCBI-ProteinID:  XP_027888660 LinkDB All DBs Position 12:complement(23562845..23568242) Genome browser AA seq 522 aa AA seqDB search MLISRDSHVKAQFRGNCSLFLFAWRKIGKYIKIPHLRRKSQTQTYVSTRTVMFSDLSAQR EGSSLLCRPASEDQGPVFERTSLDYSPRTERYRVGERSFNRQYAHIYAARLMEMRPLLSE RAKHKWGPDVHIRKLCDLETGEQCCIVGTLFKRMDLQPSILKEISEEHNLLPQPARNKYI TEADELILEDELQRIKLEGKIDRDKCVTGSVIAIFGAEKNDGKFTVEDFCMADLPSQTPR PTLSCDKFVLLASGLGLGSSKADSMLGLQLLVDMVTGQLGDAGEQSGAATISRVLLAGNL LSQSTQDKDASTKAKYLTKKTQAGSVEAIRLLDELLLQLVASVPVDVMPGQYDPTNYTLP QQPLHRCMFPLSSVYPTLQLVSNPYEANIDGVRFLGTSGQNVCDIKKYSSMDSHLEILEE TLRLRHLAPTAPDTLGCYPFYQRDPFMLEECPHVYFSGNAPVFESKLIRGSDGQEVLLVT VPDFSSTQTACLVNLRTLRCEPAFFSAFSADEDEESEMNISH NT seq 1569 nt NT seq  +upstreamnt  +downstreamnt atgttaatctcgcgagacagtcacgtgaaagcgcaatttcgcgggaattgttctctgttt ttgtttgcctggagaaaaatcggaaaatacatcaaaataccacatttaagacggaaaagc caaacccagacctacgtttctaccaggaccgtcatgttctccgacctgagtgctcagagg gagggctcctctctgctctgccgcccagcctcggaggaccagggcccggtgtttgagagg acctcgctggactacagcccccgcaccgagcgctaccgagtcggggagcggagcttcaat aggcagtatgctcacatctatgcggcacgactcatggagatgagacccctgctgtcggag agagccaaacacaagtggggtccagatgtgcacatcaggaagctgtgtgacctggaaaca ggggagcagtgttgcattgtaggaaccctgttcaagcgtatggacctgcagccatctatt ctgaaggagatcagtgaggagcacaacctcctgccccagcctgcacgaaacaaatacatc actgaagcggatgaactgattctggaggatgagctgcagaggattaaactagagggcaaa attgacagagacaagtgtgtcacaggtagcgttatcgccatctttggagccgagaagaac gacggcaagttcactgtcgaggacttctgcatggctgacctcccttcgcagacgcccaga cctacactaagctgtgacaagttcgtgctcctggcctcagggctcggcctaggcagcagc aaggccgacagcatgctgggtctgcagctgctggtcgacatggtaaccggtcagctcggt gacgcgggggagcagagcggggcggcgaccatttccagggtcctgctggccgggaacctg ctgagccaaagcacccaggacaaagatgcatctacaaaggccaagtatcttactaagaag actcaggccggcagtgtggaagccatccgcctgcttgatgagctgctgcttcagctggtg gcctccgttccagtggacgtgatgccagggcagtacgaccccaccaactacaccctccca cagcaacccctccacagatgcatgttccctttgtcctccgtgtaccccaccctgcagctg gtctccaatccatacgaagccaatatcgatggagtcaggtttttaggcacatcaggtcag aacgtgtgtgacatcaagaagtacagcagcatggacagccacctggagatattagaggag acactgcggctccggcacctggcccccacggcccctgatacgctaggttgctacccattt tatcaaagagacccgtttatgttggaggaatgtccccatgtgtacttcagtggcaacgct ccagtgttcgagtccaagctcatccgaggttctgatggacaggaagtccttctggtgacc gtgccagacttcagcagcacccagaccgcctgcctggtcaacctgcgcaccctgcggtgc gagccggctttcttctcagccttctctgccgacgaagatgaagaaagtgagatgaacatc agtcattag

Xiphophorus couchianus (Monterrey platyfish): 114160466 Help Entry 114160466         CDS       T05908                                  Symbol pold1 Name (RefSeq) DNA polymerase delta catalytic subunit   KO K02327   DNA polymerase delta subunit 1 [EC:2.7.7.7] Organism xco  Xiphophorus couchianus (Monterrey platyfish) Pathway xco03030   DNA replication xco03410   Base excision repair xco03420   Nucleotide excision repair xco03430   Mismatch repair xco03440   Homologous recombination Brite KEGG Orthology (KO) [BR:xco00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     114160466 (pold1)    03410 Base excision repair     114160466 (pold1)    03420 Nucleotide excision repair     114160466 (pold1)    03430 Mismatch repair     114160466 (pold1)    03440 Homologous recombination     114160466 (pold1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xco03032]     114160466 (pold1)    03400 DNA repair and recombination proteins [BR:xco03400]     114160466 (pold1) Enzymes [BR:xco01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.7  DNA-directed DNA polymerase      114160466 (pold1) DNA replication proteins [BR:xco03032]  Eukaryotic type   DNA Replication Elongation Factors    DNA polymerase delta complex     114160466 (pold1) DNA repair and recombination proteins [BR:xco03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      DNA polymerase delta complex       114160466 (pold1)    MMR (mismatch excision repair)     DNA polymerase delta complex      114160466 (pold1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_pol_B DNA_pol_B_exo1 zf-C4pol POL3_N REV3_N DNA_pol_B_2 Motif Other DBs NCBI-GeneID:  114160466 NCBI-ProteinID:  XP_027898870 LinkDB All DBs Position 16:complement(15749394..15760782) Genome browser AA seq 1105 aa AA seqDB search MDFKRRNGGPLMGGASQAKRGKATGDWEDSPSQFEEELSMFDDAEMDVEDMEGQAGHDVI PVGDLFSADLNPRWRRPSAPSLDPSSDTLVFQQIDLDYYLGGSIAGMPGQSQGKVPIIRM FGVTDSGNSVCCHVHGFAPYFYVPAPSGFTSNYLDEFKRELNSVVLKDMRSNKDNISITV LAVDICRKESIYGYHGQRSLDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSYQAYEAN IDFEIRFMVDSDVVGCCWIELPKDKYRVREEKTSIDTDSQTPGKVSFCQYEVDVGWTDFI SHPAEGEWQKIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQRQGETEPFIRTVFT LQACASIVGSQILCFTQEKQLLRSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKVD YFPYLGRMRGIKSVLRESNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSPDDFIKTPTGDQFVKSSMRKGLL PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI SQSVTGFGRQMIEKTKQLVESKYTISNGYQADARVVYGDTDSVMVKLGVTTVKEAMEIGR EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSPDTHDKMDCKGIETVRRDN CPLVANLINTCLQKILIERDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENNIPIDTQY YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIGCK AVLKTDAAVCDFCKKKESELYQKEIFHLNALEERFSRLWTQCQRCQGSLHEDVLCTSRDC PIFYMRKKVQKDLDDQSKLVSRFGW NT seq 3318 nt NT seq  +upstreamnt  +downstreamnt atggacttcaagcgacgcaacggtggccctctcatgggtggtgcatcccaggccaagcga ggtaaagcgactggtgactgggaggacagtccatcccagtttgaggaagaattgtcaatg tttgatgacgcagagatggatgtggaagacatggaaggacaggccggacatgatgtcatt cccgtgggtgaccttttctcagcagacctaaaccctcgttggagaaggccttctgccccc tcactggatccatcttcagatacattggtgttccagcagattgatctcgactattacctg ggtggctctatagctgggatgcctggtcagtcacaaggaaaagttcctatcattaggatg tttggtgtaacagatagtgggaacagtgtgtgctgtcatgttcatggctttgcgccttac ttctatgttcctgcaccaagtgggttcacatctaattacctggatgaatttaaaagagag ctgaactctgttgttcttaaggacatgcgctccaataaggacaacatctcgatcacagtg cttgctgtggacatctgccgtaaagagagcatatatggttaccacggacaacgcagcctt gatttcttgcggataacgatggcgatgcctcgtctcatcgcgcctgcaaagcggctgctg gaacagggctttaagtttggaccttttcccatccagagctaccaggcttatgaggccaac atagattttgaaatcaggttcatggtggacagtgatgtagtgggatgctgctggattgaa cttcccaaagacaagtacagagtgcgtgaagagaagacctcaatagacacagattctcag actccaggaaaggtttctttctgtcaatatgaagttgatgtcggatggacagacttcata agtcaccctgcagaaggagagtggcagaagatcgctccacttagggtccttagctttgac atagagtgtgcaggaagaaaaggaatcttcccagaaccagataaagatccagtgattcag atagcctctatggtccaaaggcagggtgaaactgagccgttcattcgcacagttttcacc ctccaggcctgcgctagcatcgttggctctcagatattatgcttcactcaggagaaacag cttctgcggagctgggcggagttcttaaggactgtagatccagacatcataactggatat aatatccagaacttcgactttccctacttgctcaacagagcggctgctttgaaggtggat tattttccatatttgggtcgaatgcgaggcatcaaatcagttctgcgagagtcaaacttc cagagtaagcagatggggcgcagggagaacaagaccatcaacatggagggtcgagttcag tttgatctgctgcaggttcttctaagggattacaaattacgctcctacactctgaacgct gtgagtttccattttctacaagaacagaaggaggatgtgcaacattcaatcatcaccgat ctgcagaatggaaacgagcaaacacggcgccgtttggcggtctactgcctgaaagatgcc tacctcccgctgcgcctgctgcagaaactgatgtgtgtgattaactacatggagatggcc agagtgacgggagtgcctctcacttacctcctctccagaggacagcagatcaaagttgtc tctcagctgctgcggcaggctatgaaacaggatctggtaatgcctgttgtgaaaactgag gggggagaagattacacgggagcaacggtcattgagccagagaaaggctattacagcgtt cctattgccaccctggacttttcctccttgtatccgtccatcatgatggctcacaatctg tgctacaccaccttgttgcagaaaggctctgctgagaaactgggattgtcaccagatgac ttcatcaagactcccacaggtgatcagtttgtgaagagctctatgagaaaaggtcttctt ccagagatcctggagaacctgctgtctgcccgaaagagggccaaagcggaactaaagaag gaaaccgatcctttcaagaagcaggtgctagatggccgacagctagccctgaaaatcagt gccaactctgtgtatggcttcaccggggcccaggtgggcaaactgccctgcttggagatc tcacagagtgtcactggttttggaagacagatgattgagaaaaccaaacaactggtggag tccaaatatacaatctccaacggataccaagctgatgccagggtggtttatggagacaca gactctgtcatggtcaaactcggagttacaaccgtgaaagaagccatggaaattgggagg gaagcagctgagtgggtgtcgtcgcatttcactccacccatcaagctggagtttgagaag gtgtattacccatacctgctgatcaataagaagcgctatgcaggcctgtatttctcctcc agtccagacacgcatgacaagatggactgtaaaggcattgagacagtccgcagagacaac tgccctctagtggccaaccttattaacacttgtctacaaaagattctcattgagagggat cctcaaggtgcggtggatcatgcgaaagaagtgatctcagacctgctgtgcaatcgcatt gacatcagtcagctggtcatcactaaagagctgacgcgtacagcccaggagtacgctggc aagcaggcacacgtggagctggccgaaaggatgaggaaaagggatgcaggtagcgcccca aacctgggagaccgagtcccctacgtcatcatcaaggctgcaaagggagcagccgcttac atgaagtcagaggacccaatctatgttctggagaacaatattcccatcgacacacagtac tacctggagcagcagctgtccaagccgctgctgaggatattcgagcccatcctgggggag accaaggcagagagcgtcctgctaaagggcgaccacacgcgctgcaagactgtgttgacc tcaaaggtcggaggcctcatggcattcgctcagaagagaagcacctgcatcggctgtaaa gctgtgctcaagactgatgctgctgtgtgtgatttctgcaaaaagaaagagtctgaactt tatcaaaaagagatcttccacctgaatgcgttggaggagcgtttctcccgtctgtggact cagtgccagcgctgccagggttcgctccatgaagatgtgctctgcaccagtcgtgattgt ccaatcttctacatgaggaagaaggttcagaaagatctggatgaccagagcaagcttgtg tctcgattcggatggtga

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