Xiphophorus couchianus (Monterrey platyfish): 114145718
Help
Entry
114145718 CDS
T05908
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114145718 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114145718 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114145718 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114145718 (col9a3)
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Others
114145718 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114145718
NCBI-ProteinID:
XP_027875126
LinkDB
All DBs
Position
1:21723548..21741983
Genome browser
AA seq
675 aa
AA seq
DB search
MTVFSALWVLFLCQLLWSSSAQRTGPRGTQGPPGQPGRDGTDGKPGPPGLPGKAGPKGKA
GIPGGPGKSGLPGLPGIDGLTGPDGPAGRDGPPGEAGEAGPPGPPGPPGRGRPGAPGLPG
TNGLPGGVGPQGAAGPEGLPGLPGPSGPDGPPGLPGSLQDLNGDLLCPAICPPGPPGPPG
MPGFKGHTGHKGDKGEPGKNGEKGDSGPPGQPGVPGTVGLQGPRGLRGLQGSMGSAGDRG
FPGFRGKPGIAGIIGKTGDVGEKGPQGFKGPKGEIGKIGPKGAVGGAGPKGEPGIPGRDG
KDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLPGKVGAKGSKGQIGDPGKNGEQGPSGEPG
IPGEIGVPGNRGIEGPRGVAGGIGPVGNSGPLGVKGFQGVKGALGDPGLPGPTGLRGEFG
DRGPVGASGAKGDIGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQGEIG
ARGPPGKPGLMGFQGEQGLPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANLRRP
LAPGTVGRPGPAGPPGKQGVAGSVGHPGTRGPPGYRGLPGELGDPGPRGDVGEAGDKGPV
GKAIDGPPGDQGHQGLPGVRGIVKDGRDGSPGDPGEPGESGRAGRTGHQGPPGICDTTAC
QGTSPAGKSSNPKNN
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttctcagctctttgggtgctcttcctgtgccagctgctgtggtcctcctca
gcccagaggactggccccagaggaacccaaggaccgccaggacaaccaggaagggacggc
actgatgggaaaccaggacctcctgggttgccagggaaagctggcccaaaagggaaagca
ggaataccaggaggaccaggaaaatcaggtctgccaggacttccaggaattgatggcttg
accggtcctgatggtcctgctggcagagacggacccccgggggaagcaggtgaagctgga
cctccggggccacctggacctcctggcagggggagaccaggagccccaggattacctggg
accaatgggttgccgggcggagtcggacctcagggagcagcaggtccagagggtcttcca
ggacttccaggaccttctggccctgatggacccccggggcttcctggctctcttcaagat
cttaatggtgaccttctgtgtcctgctatctgtcctcctggtccccccggcccacccggg
atgccaggatttaagggacacactggacacaaaggagacaaaggagagcccggaaaaaat
ggagagaagggggattctggtccaccgggacagccgggtgttccaggaactgttggtctg
cagggccctcgtggtctgaggggtctacagggctcaatgggatctgcaggggacagaggc
ttcccgggtttcagaggcaaacctggcatagctggaatcatcggcaagacaggcgacgtt
ggggagaaaggaccgcaggggttcaagggacctaaaggagagattggcaaaattggtccc
aaaggagcagtgggtggagcaggacccaaaggggagcctggtatacctggacgagatggg
aaagatggaacgccggggttagatggagagaagggtgatcctggacgccatggagtagtt
ggagagaaaggaccaaatggacttcctggtttgcctggaaaagttggagctaaggggtca
aaaggacaaatcggtgatccagggaagaatggggagcaaggaccctctggcgagccaggt
attcctggtgaaattggcgttccaggaaacagggggatagaaggtcccagaggagtggct
ggaggtatcggaccagtaggcaattctgggcctctgggagtaaaaggcttccagggagtc
aaaggagccttgggcgacccaggccttccagggccaacaggactccgtggggagtttggt
gacagaggtccagttggagcttctggagcaaagggagacataggtgtggcaggaagtgat
ggtttaccgggagagaatggagaacctggtccgtttgggccagttggacagaaaggagag
tcaggaaagagaggtgaactggggcctaaaggtgtgacaggtccacaaggtgagatcggg
gccagagggcctccaggaaaaccaggactgatgggcttccaaggggaacagggtctgcca
ggaatcgcaggaaagaccggtgtacctggtaaattagcgagtgagcagcacatcagagag
ctgtgtggttccatgatcgatgaccagattgcacagctagcggccaacctgcggaggccc
ttggccccaggaacagtgggccggcccggccccgcgggtcctccaggaaagcaaggggtt
gctggttcggtcgggcatccagggacccgtggaccgccaggatacagaggtctgccagga
gaacttggcgatccaggtcccagaggtgatgttggtgaagcaggtgataagggacctgtt
ggtaaagccattgatgggcctcctggagaccaaggacaccaaggtcttcctggagtacgt
gggattgtcaaagatggccgtgatgggtctcctggagatccgggtgagcctggagagtct
ggcagggcaggtaggactgggcatcagggtcctccagggatctgtgatacaacagcctgc
cagggaacgtcaccagctgggaaatcctcaaaccccaaaaacaattaa
DBGET
integrated database retrieval system
