Xiphophorus couchianus (Monterrey platyfish): 114146603
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Entry
114146603 CDS
T05908
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
114146603 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xco03036
]
114146603 (chd8)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
114146603 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_CHD1_Hrp3
MUN
DDRGK
Motif
Other DBs
NCBI-GeneID:
114146603
NCBI-ProteinID:
XP_027876641
LinkDB
All DBs
Position
6:8518526..8546027
Genome browser
AA seq
2595 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDSLPDDSFSHGSSDPVEEALKLALGQAVPTGNPESAPDLAISS
SLGVPVAAPVIPDPAPVHVPTQQPVPAAPVQTVSVAQAVDAGAAAFITSAPTPVDTVPQM
QAQTTISVASNASGASSSTVLLSSPLTVSSSPATTTTATTQQLTQITHQLTPQQLAAITQ
QAGGKIVILKGPQGQAQVLQAVSGTGGQAGGKVIRLLSGTPFKPGMSILQGGTVLNQASP
GQTQVKVGAAGVQRLLQSANGPVKQVLLTSMPQQTQGQTVQVQIPAQAQMAQGQTTVQVQ
PQPQTAQIQLQPQAQIQVQPQGQAAQTQGQVQLQPAMQGQTQGGEAKRITLVLQQPSQSG
SAAVTAQQQVAPGGQQQPTQAPARLVLGQLPSGKLVLQGSQLAALTQARAAGQAGGQPKV
LTIQLQVQQQPNQQGGVKYQLVSGAGGTGSPQVLQISQGQGGQRVAVPLKMLLQPQTSSA
TSSGGTVSVVKVINPSTAAPSATTTTPSQAIRITKAPGEPAAVRRVEILCKQEKANRIVA
EAIARAKARGEKNLPRVLNQDELPSTQTSPEMGGTLTVVSTAKKKSSGGGSKKKSPISEG
PIPKIIVGTDKKGKVVKISGGAIAVSGGAVIPGTGNKSKSKAKANTITLVGAKKRKRNAS
SDVSDGELSPPSPAALEDDMIMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVTTTAA
AVASISGGAAAQLKQEVELDGNGQPSMQFFVENPSEEDAAIVDKVLSMRITKKEVSPGQY
TNAEEFFVKYKNYSYLHCEWATMEQLEKDKRIHQKIKRFKTKHAQMRHLFQEDEESFNPD
YVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVEEFGKIQNRQ
PRLKRSARPPASSWKKLEETREYKNGNTLREYQLEGVNWLLFNWYNRQNCILADEMGLGK
TIQSITLLSEVYAAGVQGPFLVIAPLSTITNWEREFSTWTDMNAIVYHGSLASRQMIQQY
EMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVIIDEAHRLKNRNCKLLD
SLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFPSEIEFLREFGDLKTEEQVQKLQ
SILKPMMLRRLKEDVEKNLAPKQETIIEVELTDIQKKYYRAILERNFSFLSLGANSNSNV
PNLLNTMMELRKCCNHPYLINGAEEKIVAELREKYDPLAPDFHLQALIRSAGKLVLLDKL
LPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSD
RFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRN
SYEREMLDKASLKLGLDRAVLQSMSGNKDSNVNGLQQFSKKEIEDLLRKGAYAAIMDEND
EGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWQKWAKK
ADIDMDSINQKNTLVIDTPRIRKQTRQYSSLRGEGGDLSDLDSDDEYPPANSRHSRSSRR
SDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILAHARCKRRLSERDVETICRVILVFCLM
HYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEW
IRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHAESVLKGADIRDVDIW
MPEMEQQEVPAGWWDSDADRSLLAGVFKHGYEMYTTMRADPCLCFVERVGRPDDKAIDAE
QHTGDAELGDDADFDKFSEDPEFKPASRLSKDLFDEPDSMNVDDEISVEDKPVPMVTEST
AVQSGVCEWPSSSSLTARLRRLITAYQRSYRQEQLKIEAEAKGDRRRRRCEQASKLKEIA
RQERQQRWTRREESDFYRVVSTFGVEKIKKEPGVSEEGDAEFDWTRFRTFARLDKKTDES
LSRYFRSFVAMCRRVCHLPQGRGEEPSELTQTVAPITEERASRTLYRISLLRRLRERVLP
HPSLEERLLLAPRSSELPAWWSMPDHDQQLMLGASLHGVSRTELSIFSDPQFTFNSARDE
FIQNQQALPPPPPPPPPPIMTLSQPKSEMDLPGAKGEGADETALLFGGRIGSDLQSTPLS
HHGGKAQGPDWSFKNSRERTEKIGRKGEGGSDSDSDSDSGSSSSERSGSSDDSGDSDEEV
AGGGMKVRDVDEENSLLSMTPSQDSILPPEPIRVDWPKDRVLINRLDNLCHLVLSGQWPS
GRRYIPEAQLNPSSELVSEDMAYTRVIRKPSSAPTGIGAEGEDGEFTVKLLKEEGLKLTF
SKQALLPNGSGGESSGRKKRKDQELSELDGLHDPLERAPRRRDPPTWLKENPDYEVEGDM
LELLVNRSKRKRRRRANKPLTGTEKVKVINMLTGKKVGAAFCPMLQDLKEYLEENPNIAV
APEWSETVQKSGLLPESLFHRLLTEHSEIPKKSHRRRHHHHHHHHHHYHTPEPTPEDPTV
DGVEEETLVSDGAYMMDEEDLETSHHFLTSPDFDIKMEGGDSLSQGDYDSSDQEALLDDV
IMAQKDSDSSSSSDD
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctcttcgaggacactcccctgttcaacctggactccctg
ccggacgactccttctctcacggttcctcggaccccgtggaggaagctctaaagctggct
ttggggcaggccgtcccgacgggcaatccggagtccgctcccgacctcgccatcagctcc
agcctcggcgttcctgtagcagcaccggtcatcccggacccggcccccgttcacgttccc
acccagcagccggtgccagcggcgcccgttcagactgtttctgtcgcccaggccgtcgac
gctggagcggcggccttcatcacctcagcccccacccctgttgacactgtgccacagatg
caggcccagactaccatctctgttgccagcaacgccagcggggcttccagtagcaccgtc
ctgctgagctcacctctgactgtttccagctccccggcgaccaccaccactgccaccacg
cagcagctgactcagataactcaccagctcacgccccagcagttagctgccatcacgcag
caagccggtgggaaaatcgtcattctcaaaggtccccagggtcaggcccaggtgctgcag
gccgtatcaggaaccgggggtcaggccggtggaaaggtcatccgtctgttgtctggcacg
ccgttcaagcccggcatgtcaatactgcagggaggaacggtcttaaatcaggccagccca
ggacagacccaggtcaaggtgggggccgcaggggtgcagcgcctgctgcagtccgccaat
gggccggtcaagcaggtgttgctcacgtccatgcctcagcagacacaaggtcagacggtt
caggtgcagattccagcccaggcacagatggctcaaggtcagactactgtccaggttcag
cctcagccccaaaccgctcagatccagctccaaccccaggcccagatccaggtccagcct
caaggccaggcagctcagacccagggtcaggtgcagctccagccggccatgcagggccag
acgcagggtggcgaagcaaagcgcatcaccctggtcctccagcagccgtcccagtccggc
tctgcagccgttaccgctcaacagcaagtggcacctggaggtcaacagcagccaacgcag
gcccctgccaggctggttctgggtcagctccctagcggcaaactggtgctccagggaagc
cagctagcggctctgacccaggcccgggctgcaggtcaggccggggggcagcccaaggtc
ctcacaatccagctgcaagtacaacagcagcccaatcaacaaggaggagtgaagtaccag
ttggtatcgggggctggcggcaccggcagcccacaggtgctgcagatttcccagggccaa
ggaggacagcgggttgccgtacctctcaaaatgctgctgcagccgcagacaagctcggcc
acatcttccggcggcaccgtctctgtggtgaaggtcatcaacccgtcgacggcagccccc
tccgctacgaccacgactccatcgcaggccatccgcatcaccaaggcccccggcgagccc
gcggccgtccgacgcgtggagatcctctgcaagcaggagaaggccaatcgaatagtggcg
gaggccatcgctcgggccaaagcacgcggcgagaagaacctgcccagagtcctgaatcag
gacgagcttccgtctacgcaaacctccccggagatgggagggactctgactgttgtctca
actgctaaaaagaaaagcagcggtggggggagcaaaaagaaaagtcccatatctgaagga
ccgatacccaaaatcattgtggggaccgacaagaagggcaaagtggtgaaaatatcagga
ggagcgattgcagtgagcggcggcgcagttatacccggaactggaaacaaaagcaagagc
aaggctaaagcaaacactattacccttgtaggagcaaagaaaagaaagagaaacgcgtct
tcagacgtctctgatggggagctgagcccaccttcacctgccgcactggaggacgacatg
attatgaagaggcgctccaaccgggtggtgaagaggaagaagtacacggaggacttggat
attaagataacggacgatgaggacgagcaggaagacgtggatgttaccacgactgcagcc
gccgtggcctccatcagcggcggggcggcagctcagctgaaacaggaagtggagcttgat
ggcaacggacagcccagcatgcagttttttgtggagaatccgagtgaggaagatgccgcc
atcgtagataaagtcttgtcaatgaggataactaagaaagaagtttccccaggccagtat
actaatgccgaggagttctttgttaaatacaaaaactattcatacctgcactgtgagtgg
gccacgatggagcagctggagaaagacaagaggatccatcaaaagatcaagagattcaag
accaaacacgctcagatgaggcatttgttccaggaggacgaggagtcttttaacccagac
tacgtggaggtggacaggatcctcgacgtgtcccacagcgtggacaaagacaacggcgag
cctgtcatctactacctggtgaagtggtgctctctgccttatgaagacgctacttgggag
ctaaaggaagacgtcgacgaggggaaagttgaagagttcggcaaaatccaaaacagacag
cctcgcctaaagagatcggcgcggcctcctgccagctcatggaaaaagttagaggaaacc
cgagagtacaagaacggcaacacactaagagagtatcagctggaaggagtcaactggctt
ctcttcaactggtacaacaggcagaactgcatcctggcagacgagatgggtctggggaag
accatccagtccatcacgctgctgtccgaagtgtacgccgccggagtacaaggccccttc
ctggtcatcgctccgctctccaccatcaccaactgggagagggagttctccacctggacc
gacatgaacgccattgtgtaccatggaagcctcgccagccggcagatgatccagcagtat
gagatgtactgcaaagacgacaagggacatttaattccaggtgcgtacaagtttgacgcc
ctcatcacgaccttcgagatgattctctcggactgccccgagctgagggagatctcgtgg
cgctgcgtcatcatcgatgaggctcaccggctaaaaaaccgaaattgcaaactgttggac
agtttgaagatgctcgacctggaacacaaagtgctgttgaccggcacgcctcttcagaac
accgtggaggagcttttcagcctccttcacttcctggagccaactcagttcccgtctgaa
atcgaattcctccgagagtttggagacctcaaaactgaggagcaggttcagaaactccag
tccattttaaaacctatgatgttgcggagactcaaagaagatgtggagaagaacttggca
cccaagcaggagaccattattgaggttgagttgactgatatccagaagaagtactaccgg
gccattctggagaggaacttcagcttcctgagtttaggagccaacagtaacagcaacgtc
cccaatctgctcaacacgatgatggagctccgaaagtgctgcaaccacccctacctcatt
aatggtgctgaagagaagatcgtggcggagttgcgggagaagtacgaccccctggccccg
gactttcatttgcaggccctaattcggtccgccggcaaactggtgctacttgataaactg
ctgcctcggctcaaggccggcggccacaaagtcctcatcttctcccagatggtgcgctgc
ttagacattctagaggactacctcatcaacaagagatacctttacgagagaattgatgga
agagttcgtgggaacctgcgacaggcagccatcgatcggttcagcaagccggattcggat
cgcttcgtcttcctcctttgtactcgtgctggcggtctgggtattaacctgaccgccgct
gacacctgtgtcatattcgactctgactggaaccctcaaaacgacctgcaggcccaagca
agatgccatcgtattggccagtcgaaggcagtcaaggtctaccgcctcatcaccaggaat
tcctatgagagggaaatgctggacaaagcgagtctgaaactcggtctggaccgtgctgtt
ctacaaagcatgagcggcaacaaggacagcaacgtcaacgggctccagcagttctccaag
aaggaaatcgaggaccttttgaggaaaggagcttacgccgccatcatggatgaaaacgac
gaaggcagtcggttctgcgaggaagacatcgaccagatccttcagcggcgagccaccaca
attactatcgagagcgaaggcaaaggttccacgttctctaaagccagcttcgttgcatct
gagaaccgcaccgacatcgccctggacgaccccgagttctggcagaagtgggccaagaaa
gccgacatcgacatggattccattaatcagaagaacacacttgtgatcgacactcccagg
atccggaagcagacgcgccagtactccagtttgcgaggcgaaggaggagacctgtcggat
ttggacagcgacgacgagtatccgcctgccaattcaagacactccaggtcttctcgccgc
tcagaccgccacagcgggggaggttacggccgtaccgactgtttccgggtggagaaacac
ctccttgtctatggatggggccgctggagggacatcttggcccacgccagatgtaagcga
cgtctgagcgaacgtgacgtagaaaccatctgccgtgtcattctggtgttttgtctaatg
cactatcgtggcgacgagaacataaagagtttcatctgggagctcataacgccaccggag
aatggccgagaaccccaaacactactaaaccactctggcctttctatccctgttccaaga
ggcaggaaaggtaagagggtcaaagctcagagcacgttcgatgttcagaaggtggagtgg
atccgcaagtacaaccccgacaccctgctgctcgacgacagctaccgcaaacacctgaag
caccagtgcaacaaagtgttgctcagggtccgtatgctctactacctgaagcaggaggtc
ataggtgaacatgcagagtctgtcctgaagggggctgacattagggatgtcgacatctgg
atgccggagatggagcagcaagaggtgcctgcaggttggtgggactctgatgcagaccgc
tctctgctcgctggcgtcttcaaacatggttatgagatgtacactaccatgcgggccgat
ccctgcctctgcttcgtggagagagtcggtcggccagacgacaaggccatcgatgctgag
cagcacactggggacgccgagcttggagatgatgccgactttgacaagttctcagaggat
ccagagttcaagccagcatccagactctccaaagatctttttgatgagcctgactctatg
aacgtggatgatgagatctcggtggaggacaagccggtaccgatggtcacggaaagcaca
gccgtccagagcggcgtgtgcgagtggccttcgagctcttcgctgacagcgcggttgagg
cggctgatcacggcgtaccaacgcagctacagacaggagcagctgaagatcgaagccgag
gccaaaggggatcgccggcggaggcgctgcgaacaggccagcaaactgaaggaaatcgca
cggcaggaacgacagcaacggtggacgcggagagaagagagcgacttctaccgcgtggtc
tccacgtttggagtggagaagatcaagaaggagccgggtgtctcagaggagggggacgcg
gagtttgattggacgcgtttccgaacttttgcccgtctggataaaaaaaccgatgagagc
ctcagtcgatacttccgttcattcgtcgcgatgtgccggagagtgtgccacctcccccaa
ggccgtggtgaagagccgtcagagctgactcagactgtggctcccatcacagaggaacgt
gcctcccgcacgctgtaccgcatcagcctcctgcggcgcctccgcgagcgcgtcctgccc
cacccctccctggaggagcgcctcctcctggcgccgcgcagctccgagctgcctgcctgg
tggagcatgccggaccacgaccagcagctgatgctcggcgcctcgctccacggcgtcagc
cgcaccgagctctccatcttctccgacccgcagttcaccttcaactccgctcgcgacgag
ttcatccagaaccagcaggctttgccgccacctccacctcctcctcctccgcccatcatg
acgcttagccagcccaagtctgagatggacttacctggagcgaagggggagggggccgac
gagaccgccctactgtttggagggagaatcggtagcgacctgcagagcacccccttgagt
caccatggcggcaaagcacagggtccagactggagcttcaaaaacagcagggaaagaaca
gaaaaaattggaaggaaaggcgaaggagggtccgattcggattcagactccgactcgggc
tcatcatcctcagagcgatccggtagcagcgacgacagcggagacagtgacgaggaagta
gcgggagggggcatgaaggtaagagacgtggatgaagaaaacagtctgctctccatgact
ccatctcaagacagcatacttccacctgagccaatcagagtcgactggcctaaggaccgc
gtgctgatcaaccgcctggacaacttgtgtcacctggtgctgtcgggtcagtggccctcg
gggcggcgctacatccccgaagcccagctcaacccgagctccgagctggtaagcgaggac
atggcgtacacccgggtcatccggaaacccagcagcgcaccgaccggcatcggggcggag
ggagaggacggagagttcaccgtaaaactcctcaaggaggagggtctgaagctgacgttc
tccaagcaggctctgctgcccaacgggtcagggggagagagcagcgggcgcaagaaacgc
aaagaccaagagctatcggagttagacggcctccatgacccactggagcgtgctcctcga
cgaagggacccccccacgtggttgaaagagaatccagattatgaggtggaaggagacatg
ttggagctgctggtgaacaggagtaagaggaagaggaggaggcgagcgaataaacccctt
acaggcactgaaaaggtcaaggtcatcaacatgctgacgggaaagaaggttggagctgct
ttctgtccgatgctgcaggatctgaaggagtatctggaagagaatcctaatatcgccgtt
gcacccgagtggtctgagacagttcaaaaatcaggtttgctgcctgagtccctcttccac
cgcctgctgacggagcactccgagatcccgaagaaaagccaccggcggcgtcaccaccac
caccaccaccaccatcaccattaccacactcccgagcccacgcccgaagaccccaccgtg
gacggcgtagaagaagagactctggtttcggacggagcctacatgatggacgaggaggac
ctggagacgtcccaccacttcctcactagcccggactttgacatcaaaatggagggcggt
gacagcctctcccaaggcgactacgacagctcggatcaagaggcgctgctggatgacgtc
atcatggcgcagaaggactctgactcttcatcaagctcagacgactga
DBGET
integrated database retrieval system
