Xiphophorus couchianus (Monterrey platyfish): 114147627
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Entry
114147627 CDS
T05908
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
3.6.4.13
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04622
RIG-I-like receptor signaling pathway
xco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114147627 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
114147627 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xco04054
]
114147627 (ifih1)
Pattern recognition receptors [BR:
xco04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
114147627 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
SWI2_SNF2
CARD
AAA_22
C1_4
Motif
Other DBs
NCBI-GeneID:
114147627
NCBI-ProteinID:
XP_027877931
LinkDB
All DBs
Position
7:17494448..17512498
Genome browser
AA seq
970 aa
AA seq
DB search
MASDNDEIYERRIECLRPRLQQIIKADEVLPHLQLESGRKEQITQKLNTEGYKSAADLLI
SVVVEKPHKDGWFRAFVDALSNGGNAHAADYLQLNLPDPEVEAENDYYVQLIQLFSPSLQ
DMKTEEVSTQCLAQRLLTNADQEKILAEKTNHGNKRGATELLSRIVKCRPGWFSEFREIL
RVTEHKHLYELIGGSPECKKPKNVAAAEEKPAESCQSEEPMEISGTEGSQNDATDLYSSA
DLSKSMNNLHLDLSGCPAAEAAGATGGDPKEISLRDYQMEVARPALEGENIIICLPTGSG
KTRVAVYITQKHLDSRRAEGKPGKVVVLVNKIPLVEQHFSTEFSSLKLKYKVERVSGDSE
LKISFANIVERNDIIICTAQILENYLERASSGEDEGVKLSDLTLIIIDECHHTQKGEVYN
HIMMRYLKQKHKNKRLIKEQKQPVPLPQILGLTASPGVGGAKTLNKAEEHILRICANLDV
TKIMTGSIDKKELRKSILPIEPRKEDPFGCVVKTIMTAIHEHARLFPTCDLGSQNYEQWA
VQKEREAAKDGDQTVRVCAEYLRRYNEGLILSNTIRMCDALSFLNKFHEEQIKKKTSQDE
QNIEITETERFLFNLFKDKKEELEKLAKDPTYENDSLSKLRTKILQEFSSRQEARGIIFT
KTRHSAMSLSQWIEENPKFADIGVKPSYFIGGGDQSDTKPMTAAEQKDVLKRFKTGELNL
LIATTVAEEGLDIKACNFVIRYGHVTNEIAMIQSQGRGRAEDSTYTVVDVKNSGVAEKEY
VNEYREKMMNKAIQKIKKYDQSVYNKQITEFQIQAIMEERVRQANQKKKAVKDENPSAVK
FSCRNCTKYICSGEDIKIIENMHRVNVTPQFRNLFIQRENVSLQERRLDYETNGVIACSG
CGQTWGSMMLYRGIELPCLHVKNFVVDINTKKYSNCTRWIDLPVKFPDFDYIEHASLMAQ
GSDDEDTEWP
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgataatgatgagatatatgaacgtcgcattgaatgcttaagaccgagactc
cagcagattataaaggcagacgaggtactaccacatttacagttagaatctggacgaaag
gagcagatcacacagaagctgaacacggaaggttataaatcggctgcggatctgcttatt
agtgtggttgttgagaagccacataaagacggctggttcagggccttcgttgatgcgttg
agtaatggaggcaacgctcacgctgctgactacttgcagttaaacctcccggaccctgaa
gtggaggcggagaatgactactatgtccagttaattcagttatttagtcccagtctgcag
gacatgaaaacagaagaagtgtcgactcagtgcttagctcaacgtctcctaactaatgcg
gaccaagagaagattttggctgaaaaaacaaaccacggaaataaacgtggggcgactgaa
cttctgagcaggatcgtgaaatgccgacctggctggttctctgaatttcgggaaattctg
cgtgtcactgaacacaaacacctttatgagctcattggaggatcacctgagtgtaagaaa
ccgaaaaatgtagcagcagcagaggagaaaccggccgaaagctgtcagagtgaggagccc
atggaaatcagcggcaccgagggatctcagaatgatgccacagatctgtattcaagcgct
gacctgtccaaatccatgaataatttacatctagatttaagtggctgtccagcagcagaa
gcagcaggagccaccggaggagacccaaaagaaatttctcttcgtgattatcagatggaa
gttgccaggcctgccttggagggggaaaacattattatttgcctcccgacaggaagcggt
aaaaccagagtagcagtgtacattacccaaaaacatctggacagcaggagagctgagggg
aaaccagggaaggtggttgtcctggtgaacaagattcctcttgtggagcagcatttctcc
acagagttctcttccctgaagctcaagtacaaagtggagagggtcagtggagactctgag
ctcaaaatctcctttgctaacattgtagaaagaaacgacattatcatctgcacagcccag
attcttgaaaattacttggagagggcttccagcggagaggatgaaggggtgaaactaagc
gatctgacactgatcataatagatgaatgtcaccacactcagaaaggagaagtctacaac
cacatcatgatgaggtacttgaaacaaaagcacaagaacaaaaggctcattaaggagcag
aagcagcccgtaccacttcctcagatcctgggcctgacagcatcaccgggagtcggaggt
gccaaaaccctgaataaagctgaagagcacattctgcgaatttgtgcaaacttggatgtt
accaaaattatgacaggaagcattgataaaaaggaactacgaaaatccattctgcctatt
gaaccgagaaaagaggatccctttggttgtgtggtcaagacaatcatgactgccatccac
gaacatgcccggctttttccaacatgtgacctgggctctcagaattacgaacaatgggct
gttcaaaaagagcgagaagctgccaaagatggagaccagacagtgcgggtctgcgcagag
tacctccgacggtataatgaaggtctgattttaagcaacaccatacgcatgtgtgatgca
ctcagtttcctgaacaagttccacgaggagcagatcaagaagaaaacgtcacaagatgaa
caaaacatagaaataacagagacagagagatttttgttcaatttgtttaaagacaaaaag
gaagaactggaaaagcttgcaaaggatccaacatacgaaaatgacagcctctcaaaactc
agaactaaaattttgcaagagttcagcagcagacaagaagccagagggatcattttcacc
aaaacacgtcacagcgctatgtctcttagccagtggattgaagaaaacccaaagttcgct
gacattggagtaaaaccttcttatttcattggaggaggagaccagagcgatactaaacca
atgacagctgcagagcagaaggatgtgttgaaaaggttcaaaaccggtgaactcaacctc
cttattgctaccacagtggcagaagaaggtttggacataaaagcctgcaattttgttatc
cgatatggccatgtgaccaacgaaattgctatgattcagtctcaaggcagaggaagagct
gaggacagcacatacactgtcgtggatgtaaagaactcaggggtggctgaaaaggagtat
gtcaacgaataccgtgagaaaatgatgaacaaagccattcagaaaatcaaaaaatatgat
cagtcagtttacaacaaacaaatcaccgagtttcagattcaggctataatggaggaaaga
gtgagacaggcaaatcagaagaagaaggctgttaaggatgagaacccatctgctgtaaag
tttagctgtcgtaactgtaccaaatacatctgcagcggcgaagacatcaaaatcattgaa
aacatgcacagagtcaatgttacaccacagtttaggaaccttttcatccagagagaaaac
gtatctcttcaggagcgacgtttggactatgagaccaatggagtcatagcttgcagtggc
tgtggtcagacatggggatcaatgatgttgtatcgtgggattgagctgccctgtcttcat
gtgaaaaactttgtggtggatataaatacgaaaaaatacagcaactgcaccaggtggatc
gaccttcccgtcaagtttcctgacttcgactacatcgaacacgccagtctgatggcacag
ggctcggatgacgaagacacagagtggccctaa
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