Xiphophorus couchianus (Monterrey platyfish): 114148319
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Entry
114148319 CDS
T05908
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04518
Integrin signaling
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114148319
04518 Integrin signaling
114148319
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114148319
09142 Cell motility
04820 Cytoskeleton in muscle cells
114148319
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114148319
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114148319
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114148319
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114148319
Hyaluronan
Extracellular matrix or blood plasma proteins
114148319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
114148319
NCBI-ProteinID:
XP_027879323
LinkDB
All DBs
Position
7:18833120..18851226
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AA seq
1047 aa
AA seq
DB search
MTGINSVAPMILWVIILTVFQAASPQPAPPRGPRPIPGRGDSPEPTPAPLPPEPTPRPEG
CETTIIDCPIKLFFTIDTSETIALQESPPGSLVESIKEFMKIFAQNLENEEYRGQIQITW
SLGGLHFSQKQVLFSQFTTKQSFIRNLSQIKYLGKGTYIDCALTNMTHEMTYSGTQAVLF
SVVITDGHVTGSPCGGIKVAGDRARDQGIHIFSVAASRRVNELGMREIVGSPTEVYRDDY
IVMEIVNGRPRMNTETIDRIIKVMKYQAYLQCYKPTCLAVPGIPGRKGASGQKGIKGDRG
IKGPKGHKGNQGDPGIEGSIGRPGLKGEVGFKGEKGEIGLIGAKGAAGSPGRNGTDGQKG
KFGRIGAPGCKGDPGEKGPNGYPGDPGDSGLSGKTGEKGDTGLPGKIGPPGPVGNPGLKG
EKGNPGNPGSPGGRGVPGISGKPGLRGELGRRGDPGRKGAPGQDGAPGPKGDQGASGDRG
RPGEDGVRGAKGDQGLPGPRGRPGEPGSTGGNGMVGPPGEPGLRGDPGPRGPQGDNGRPG
FNYPGPRGPTGERGDPGKRGPRGGRGECGAKGEPGAKGAPGEPGEPGQPGEPGERGPQGD
PGKDGGPGPAGDPGLTDCDVMTYIRETCGCCDCEKHCGALDIVFVIDSSESVGMTNFTLE
KNFVINTINRLGSMASDPTSPTGTRVGVVQFSHKGTFEVIRLDDPSIDSMSSFKTAVKNL
QWIAGGTFTPSALKFAYDNLIRDSKRARAKVSVVVVTDGRFDPRDDDSKLRYLCDDPNVV
VNAIGVGDMFDKEHDSETLVSIACNNKNRITEMKKYTDLVADNFIQKMETVLCPDPVIKC
PDLPCKTELAVAPCVGRPIELVFLLDGSERLGMENFGHARHFVEMVANALTMAKNRNDQN
GARLALTEFGNENENQVAFLLTHEQKAITSGLSGLHYLDASSAVGPAIFKTINEILGKGP
TRKTRRGAEVSFVFITDGITNITNLDEAASAMRREHIFSTVIATGSDVDEEVLTTLAMGD
QTAIFKSQKFSDLLQPSFFDRFVRWVC
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgactggaatcaattcagtcgcgccaatgattttatgggtcatcattctgacggtgttc
caagctgcatcgcctcaacctgctccccctcgaggacccaggcccatacctggacgaggt
gacagtccggaaccaacaccggctccgctgccgccagagcccacaccaagaccagaaggt
tgtgagacaacgatcatcgactgtcccatcaagctgtttttcaccattgacacctcagag
accatcgccctgcaggaatctccgcccgggagtctggtggagagcatcaaggaattcatg
aagatattcgcccagaacctcgaaaatgaggagtacaggggccagatccagatcacttgg
tccttagggggattgcacttctctcagaagcaggtgttgttcagtcagttcacgaccaaa
cagagcttcatcaggaatctcagtcagataaaatacctgggcaaaggcacctacatcgac
tgcgctctcacaaatatgacccacgagatgacgtactcagggacacaggctgtcctgttc
tcagtggtcatcacagatggtcacgtgacggggagtccatgtggggggatcaaggtggca
ggcgacagggctcgggatcaagggatccacattttttcagtagcagcctccagacgcgtc
aatgaactagggatgagggagatagtcggctcacccacagaggtgtaccgagacgattac
atagtcatggagatcgttaatggaagaccgaggatgaacactgaaactattgatcgcatc
atcaaagtcatgaaatatcaagcatatctacagtgttataaacctacatgccttgcagtc
cctgggatcccgggacgaaaaggggcctcaggtcaaaaaggcattaaaggagacagaggc
atcaaaggaccaaaaggtcataaaggtaaccagggtgatcctgggattgaaggttcaatt
ggacgacctggtctaaagggagaagttggttttaaaggagaaaagggtgaaattggatta
attggagcaaagggtgcggcgggttcaccaggaaggaatggaacagatggacaaaagggt
aaatttggtcgaattggagctcctggctgcaaaggtgatccaggtgaaaaaggaccaaat
ggatacccaggagaccctggtgactctggattatctggaaaaacgggagaaaagggtgat
acaggtctcccagggaagataggccccccaggccctgtgggaaatccaggactaaagggt
gaaaagggaaatcctggaaatccaggatcacctggaggaagaggggttcctgggatcagt
ggcaaaccaggactgaggggcgaactgggcaggaggggagatcctggaaggaagggggcg
ccaggacaagatggggccccaggaccgaagggagatcaaggagcatcaggggacagaggt
cgacctggggaagatggagttaggggtgcgaagggagaccaaggactaccaggaccaagg
ggtcggccaggagaaccaggcagcactggaggaaatggcatggtggggcctcctggagaa
cccggactgagaggagaccctggaccacgtggaccgcagggagacaatggaaggccagga
ttcaactaccctggaccaagaggaccaacaggagagagaggagatccaggcaagagagga
cccagagggggcagaggtgaatgcggtgcaaaaggggagccaggagctaaaggagcacca
ggagagcctggtgaaccaggccagccaggagagccaggagagagaggaccccagggagac
cctggaaaagatggtggtccagggccagctggggatcctgggctcactgactgtgatgtt
atgacgtacatcagggagacctgtggttgttgtgactgtgagaaacactgcggcgctctg
gacattgtctttgtaattgacagctctgagagtgttgggatgaccaacttcaccctggaa
aagaactttgttatcaacaccatcaacaggctgggatcaatggcctctgaccccacatct
ccaacgggtacgagagttggagtggtacagttcagtcacaaaggaacatttgaggtcata
cgactcgatgacccttccatagactccatgtcttcattcaagacagcagtgaagaatctt
cagtggattgctgggggcacatttacaccctctgcactcaagtttgcctatgataactta
ataagggacagcaagagagcccgtgccaaagtatcggtagtggtagttacagacggtcgc
tttgaccctcgtgatgatgacagtaaactcaggtacctctgcgatgaccccaatgtggtg
gtgaatgccattggggttggtgacatgtttgacaaggaacatgacagtgagaccctagta
tcaatagcctgtaacaacaagaaccgcatcactgagatgaagaaatacacagacttagtg
gctgataacttcattcagaagatggaaacagttctctgtcctgatccagtgattaagtgt
ccagatcttccctgtaaaactgaacttgctgtagctccatgtgttggacgacccatagag
ctggtgtttcttctcgatggttcggagcgcctcgggatggaaaactttggccacgcacgt
cattttgttgaaatggttgcaaatgcattgacaatggccaagaacagaaatgaccaaaac
ggggctcgtctggcactgacagagtttggcaatgagaatgaaaaccaagtggcctttctt
cttacacacgagcagaaggctatcacttctggtctatcaggtttacattatcttgatgct
tcgtcagcagtggggcctgccatcttcaaaaccatcaatgagattttgggcaaaggaccc
actcgcaagacaagacgtggtgccgaggtctcatttgttttcatcacagatggtattact
aatatcaccaacctggacgaggcagcttctgcaatgcgcagggaacacatcttttccact
gtgattgccacgggaagtgatgtggatgaagaagtcctaacaacgttggctatgggtgac
cagactgccatctttaagagtcagaaattttctgatctgttacagcctagtttctttgac
cgtttcgtcaggtgggtgtgttag
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