KEGG   Xiphophorus couchianus (Monterrey platyfish): 114149658
Entry
114149658         CDS       T05908                                 
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
xco04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114149658
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:xco01002]
    114149658
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114149658
   03036 Chromosome and associated proteins [BR:xco03036]
    114149658
   03400 DNA repair and recombination proteins [BR:xco03400]
    114149658
Peptidases and inhibitors [BR:xco01002]
 Metallo peptidases
  Family M67
   114149658
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    114149658
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    114149658
   BRISC complex
    114149658
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     114149658
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     114149658
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172 REP_ORF2-G2P
Other DBs
NCBI-GeneID: 114149658
NCBI-ProteinID: XP_027881484
LinkDB
Position
8:3271178..3272352
AA seq 311 aa
MTSLQNHPGPDGGAEAQRAKTKSSNPEVRVRLGAVLFSSLLGVRNLCFLLKMAVSAVHLE
SDAFLVCMNHALSTEKEEVMGLCIGEVEASRIVHIHSVIILRRSDKRKDRVEISPEQLSA
ASTEAERLADSTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQCFVGLIFSCFIE
DKNTRTGRVLYTCFQSAQAQKGSEYERVEIPVHVVPREAIGKACLESAVELPRILCQEEQ
DTYRRIHGLSHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLQQNRQSIAELQRE
KERLQRELGAL
NT seq 936 nt   +upstreamnt  +downstreamnt
atgacgtcactgcagaaccatcccggaccagatgggggcgctgaagcacagcgagctaaa
acgaagtcgagcaacccggaagtgagagtgcgtcttggtgctgttttgttttcttctctt
cttggcgtcagaaacttgtgttttctgttgaaaatggccgtcagcgcggttcacctggag
tctgacgccttcctggtgtgcatgaaccacgcgctgagcaccgagaaggaggaggtgatg
ggtttatgcatcggggaggtggaggcgtcccggatcgtccacatccactcggtgatcatc
ctccgccgctccgacaagcggaaggaccgggtggagatttccccggagcagctgtccgcc
gcctccaccgaggcggagcggctggcggactccaccggcagaccgatgcgggtggtgggc
tggtaccactcccacccgcacatcacggtgtggccgtcccacgtcgacgtgcggacccag
gcgatgtaccagatgctggaccagtgcttcgtggggctcatcttctcctgcttcatcgag
gacaagaacaccaggacgggccgcgtcctctacacctgcttccagtccgcgcaggcgcag
aagggctctgagtacgagcgagtggagattcccgtgcacgtggtgccgcgagaggcgatc
gggaaggcgtgcctggagtccgccgtggagctgccgcggatcctgtgccaggaggagcag
gacacgtaccgccggatccacgggctgtcccacctggacccggtcaccaagatccacaac
ggctcggtgttcaccaagaacctgtgcagccagatgtccgccgtcagcgggccgctgctg
cagtggctggaggaccggctgcagcagaaccgccagagcatcgcggagctccagcgggag
aaggagcggctgcagcgggagctgggtgcgctgtga

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114155338
Entry
114155338         CDS       T05908                                 
Name
(RefSeq) LOW QUALITY PROTEIN: lys-63-specific deubiquitinase BRCC36-like
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
xco04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114155338
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:xco01002]
    114155338
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114155338
   03036 Chromosome and associated proteins [BR:xco03036]
    114155338
   03400 DNA repair and recombination proteins [BR:xco03400]
    114155338
Peptidases and inhibitors [BR:xco01002]
 Metallo peptidases
  Family M67
   114155338
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    114155338
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    114155338
   BRISC complex
    114155338
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     114155338
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     114155338
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 114155338
NCBI-ProteinID: XP_027890980
LinkDB
Position
13:complement(25197..26421)
AA seq 342 aa
MTSLQNHPGPDGGAEAQRAKTKSSNPEVRVRLGAVLFSSLLGVRNLCFLLKMAVSAVHLE
SDAFLVCMNHALSTEKEEVMGLCIGEVEASRIVHIHSVIILRRSDKRKDRVEISPEQLSA
ASTEAERLADSTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQCFVGLIFSCFIE
DKNTRTGRVLYTCFQSAQAQKGSEYERVEIPVHVVPREAIGKACLESAVELPRILCQEEQ
DTYRRIHGLSHLDPVTKIHNGSVFTKNXCSQMSAVSGPLLQWLEDRLQQNRQSIAELQRE
KSGCSGSWVRCEPAGRLSDNGRIGAVSSAFRAELEPFFCCYY
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgacgtcactgcagaaccatcccggaccagatgggggcgctgaagcacagcgagctaaa
acgaagtcgagcaacccggaagtgagagtgcgtcttggtgctgttttgttttcttctctt
cttggcgtcagaaacttgtgttttctgttgaaaatggccgtcagcgcggttcacctggag
tctgacgccttcctggtgtgcatgaaccacgcgctgagcaccgagaaggaggaggtgatg
ggtttatgcatcggggaggtggaggcgtcccggatcgtccacatccactcggtgatcatc
ctccgccgctccgacaagcggaaggaccgggtggagatttccccggagcagctgtccgcc
gcctccaccgaggcggagcggctggcggactccaccggcagaccgatgcgggtggtgggc
tggtaccactcccacccgcacatcacggtgtggccgtcccacgtcgacgtgcggacccag
gcgatgtaccagatgctggaccagtgcttcgtggggctcatcttctcctgcttcatcgag
gacaagaacaccaggacgggccgcgtcctctacacctgcttccagtccgcgcaggcgcag
aagggctctgagtacgagcgagtggagattcccgtgcacgtggtgccgcgagaggcgatc
gggaaggcgtgcctggagtccgccgtggagctgccgcggatcctgtgccaggaggagcag
gacacgtaccgccggatccacgggctgtcccacctggacccggtcaccaagatccacaac
ggctcggtgttcaccaagaacntgtgcagccagatgtccgccgtcagcgggccgctgctg
cagtggctggaggaccggctgcagcagaaccgccagagcatcgcggagctccagcgggag
aagagcggctgcagcgggagctgggtgcgctgtgagccggcgggacggctgtccgataat
gggcgcatcggtgctgtgtcttccgcttttcgggcagaactcgaaccttttttctgttgc
tattactga

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