Xiphophorus couchianus (Monterrey platyfish): 114153970
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Entry
114153970 CDS
T05908
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114153970 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114153970 (cnot1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114153970 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114153970 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
114153970
NCBI-ProteinID:
XP_027888475
LinkDB
All DBs
Position
2:complement(7380652..7411643)
Genome browser
AA seq
2405 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFVIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSACDKQTMD
TLTGISALSLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPTTPFGVHSSI
SSQLPGMDSAIGSSIGSSISSSIGSSLGMPSVSSDPFVTRKMSTPVLNPPTFQQSKMKAS
DLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREV
FNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFG
SKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVK
MQGSITTPGSVALAHAQAQSQQPPNLKAPQPGQPSTLATTTTTTTTTAAKTGTISRPTQS
TFKKDMPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKE
TVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSD
KAAANFSDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVA
KVLESSLRSMVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPG
NLLKDKEKLKNLEEQLSAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGP
PTPQFSYHDINVYALAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRS
IKIAMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNS
FAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKH
ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDSKQLAVYEEFARNIPGFLPSNDLSQPT
GFLAQPMKQQAWATDDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARN
SRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQIT
RCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLV
DERSVSHVTEADLFQTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSG
EATNTVTKINLLNKVLGIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVT
FLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVME
GTGAS
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttgtgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgcccacctgtttactcaattgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcccgaccttctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggctttcaagacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gagcagattgacgccttccttaagacactttgccgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactccggggagttagctaagaccatcatggagagttctctcgcagacttcattcag
gaagttggttacggcttttgtgccagtcttgatgaatgcagaaacataatccttcagtat
ggggtgagagaggtgacagccagccaggtagccagagttctgggaatgatggcccggacg
cactccggcctgtctgacggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgacggctcgcaggcacatacgtggaatgttgaggtt
ctcattgacattgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacgtacgaa
ctggaccaccccggatttctgatccgagacagcaagggcctgcagatcgtggtgtatggg
atccagcgggggttgggaatggaggtcttccctgttgatctcatttaccgctcatggaaa
cacgcagagggacagctgtcgtttattcagtactctctgatgaacccagaagtgttctgc
tttgctgactacccatgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtctcctcagactc
tctgagcttgggcaatacgaacaggtgaagcagctcttcagcttccccatcaagcactgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttacgccat
gagctcatttccactctcatgcccatctttcttggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctcattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaaactgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggagaaccgttcatccaggcatgtgttacgtttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccggagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacgatcctcaccatggttgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacaggtatcggcatgtgacaaacaaacgatggac
actctgactggcataagcgccttgagtctgggcagcaccgccacctcccacactcagagc
atgcagtgcttcgccacctcactgagctcggctctcagtaaccctctgtccccctcaaag
gccttccctcctcttccaaacccgaacccaaccacaccttttggggttcatagcagtatc
agttcccagcttcctggtatggactctgccatcggctccagcatcggctccagcatcagc
tccagcatcggctccagcctgggaatgccgtcagtcagctcggatcccttcgtcaccagg
aagatgagcacacctgtcctgaaccctcctacctttcagcagagtaagatgaaggcctct
gatctttctcaggtgtggccagaggctaaccagcactttagtaaggagatcgacgacgaa
gcaaacagttacttccagcgtatctacaaccacccacctcacccgaccatgtctgtggac
gaagttctggagatgctacagaggtttaaggactcaaccatcaagcgagaacgagaggtg
ttcaactgcatgcttcgaaacttatttgaggaataccgattcttccctcagtacccggac
aaagaactgcacatcactgcctgcctctttggtggcatcattgagaagggtctggtaacc
tacatggcgctgggtctggccctgcgatacgttctcgaagctttacggaaaccattcgga
tccaaaatgtattactttggaattgctgcactggatagattcaaaaacagacttaaagac
taccctcagtactgtcaacacttggcttcaattgctcactttttgcagtttccacaccat
ttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgtgaccctccggtgaag
atgcagggatccatcactacacctggaagcgtcgccctggcccacgctcaggctcagtcc
cagcagccgcccaacctcaaagccccccagccgggccagcccagtacactggctaccacc
accaccaccacaacgaccactgcagccaaaacaggcaccatctcaaggcccacgcagagc
accttcaagaaggatatgcctccttccataaacactaccaacatcgacacacttctggtg
gcgacggatcaaaccgaacggattgtagaacctccagagaatgtccaagagaagattgct
ttcatcttcaacaacctttctcagtccaacatgacacagaaggtagaggagttgaaggaa
acggtgaaggaagagtttatgccgtgggtgtctcagtacctagtgatgaagcgcgttagc
attgagccaaactttcacagtctctattccaactttttggacacactgaagaacccggag
tttgtcaagatggttctcaatgaaacttacaggaatatcaaggtgcttctaacctctgac
aaagcagctgctaacttctccgatcgctccctgctcaagaaccttggccactggttgggc
atgatcactctggccaaaaacaagccaatcctctacacagacctggagctcaaatctctc
ttgctagaagcctatgtgaaaggccagcaggagctcctctatgtggttccctttgtggcc
aaagtcttggagtctagcctacggagcatggttttcaggcctcagaacccttggactatg
gccatcatgaatgttctcgctgagctccatcaggaacatgacctcaagttgaatttgaag
tttgagattgaagttctgtgcaagaacttgtctctggacatcaacgagctgaagccaggg
aacctgctgaaggacaaagagaagctgaagaacctcgaggagcagctgtctgcaccaaag
aaagaagcgaagcctccagacgaaatcctgccacctcctaccacaggtgactttgttccg
tttccagctccttccacaaccccagctgccaccaccaccacctgcaccaccaccgggccg
cccacgcctcagttcagttaccatgacatcaatgtctacgccctggcaggcctggctcca
catatcaacattaatgtcaacatcgctctgctgcaggctcatcctcagctcaaacagtgc
gtgcgtcagtctgtggagcgagcggtccaggagctggtgcaccccgtggtggaccgttcc
atcaaaatagccatgacaacatgcgagcagatcatcaggaaggactttgccctggattcg
gaggagtctcgcatgcgcgtagccgcccaccacatgatgagaaacctgaccgctggcatg
gccatgatcacctgccgcgagccgctgctgatgagcatcgccaccaatctgaagaacagc
tttgctgcggcgctcagggcaccgacgccacagcagagagaaatgatggaggaggctgca
gccaggattgctcaggataactgtgaactggcctgttgcttcatccagaaaactgctgtg
gagaaagctggacctgaaatggacaagcggctggccacagagtttgagctgaggaagcac
gcacggcaggaaggccgtcgctactgtgaccccgtcgtcctaacctaccaggctgagcgc
atgccggaacagatcagactcaaggtgggaggagtggactctaaacagctggctgtttat
gaagagtttgcgaggaacattcccggtttcttacccagcaacgatctctcccaacccact
ggcttcctggctcaacccatgaagcaacaagcctgggccactgacgacgtggctcagatc
tacgataaatgcatcacagacttggagcagcaccttcatgccattcctccagcgctcgcc
atgaacccgctgacccagggtctgcggaacctgctggaagccgtggctttggcgcgaaac
tccagggatggcattgctgcccttggcctcctgcagaaggccgttgaaggtctcctggac
gccaccagtggtgctgatgctgacctgctgcttcgctacagagagtgccacctgctggtg
ctgaaagctctgcaggatggacgggcctacggaccgcagtggtgcaataagcagattacc
aggtgtctgattgaatgccgggatgaatacaagtataacgtggaagcagtagagcttctg
atcaggaaccatctggtgaacatgcagcagtacgacgtgcacctggcgcagtcgatggaa
aatggactccactacatggcggtcgcatttgccatgcagctggtgaagctgctgctggtg
gacgagcgcagcgtgagccacgtcaccgaggcagacctcttccagaccatcgagattctg
atgagaacctgcgcacactccagagccaacgcaccagaggggcttccccaactgatggat
gtcgttcgctccaattacgaagccatgattgaccgagcacacggagggcccaacttcatg
atgcactctgggatttcccaagcttccgaatacgatgatcctccaggtctgagggagaag
gcagagtacttgctgagagagtgggtcaacctgtatcactcagctgcagctggcagggac
agcaccaaagctttctctgcctttgtcggccagatgcaccagcagggcatactgaagacc
gacgacctgataacgcggttcttccggctgtgcacagaaatgtgcgtggagatcagctat
cgtgcacaggctgaacagcagcacaacccagcagctagcgtagccatcatcagagccaaa
tgttaccacaacctggatgccttcgtccggctcatagccctgctagtgaagcactctgga
gaggccaccaacaccgtgacaaagatcaatctgctcaacaaggttctggggattgttgtc
ggagtgctgatccaggaccacgatgtccgtcacacagacttccagcagctgccgtatcat
cgcatttttatcatgctgctgttggagctcaacgcgcccgaacacgtcctggagaccatc
aacttccagacactcactgccttctgcaacacgttccacatcctgagacccaccaaagct
cccggcttcgtgtacgcctggctggaactgatctcccatcgcatcttcatcgccaggatg
ttggcgcacactccccagcagaagggttggcccatgtacgcacaactgctgattgacctc
tttaagtatctggctcccttcctgaggaacgtagagctcaacaaacctatgcaaatcctc
tacaagggcacactgagggtgcttctggtcctgttgcatgatttcccagagttcctctgt
gattaccattatggcttctgtgatgttatcccacccaactgcatccaactccgcaacctt
atcctcagtgccttcccacgcaacatgaggcttccggatcccttcacacccaacctaaag
gtggacatgctgagcgagataaacatcgctccccgtatcctcaccaacttcacaggcgtc
atgccgtctcagttcaagaaggatctggactcctacctgaagactcgctcacctgtgact
ttcctgtctgagcttcgcagcaacttgcaggtgtcgaacgagccaggaaaccgctacaac
atccagctgatcaacgcattagtgttgtatgtcggcacacaggccatcgctcacatccac
aacaagggcagcaccccgtccatgagcaccatcacacactctgcacacatggacatcttc
cagaacctggctgtggacctggacactgaagggcgatacttgttcctgaacgcgatagcc
aatcagctgcgctacccaaacagccacactcactacttcagctgcaccatgctctacctg
tttgctgaggccaacaccgaggccattcaagagcaaatcaccagggttctgcttgagagg
ctgatcgtcaacagacctcacccctggggactcctcatcaccttcatcgagctgatcaag
aatcctgccttcaagttctggagtcacgactttgttcactgtgcacctgagattgaaaag
ttgttccagtccgtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggag
ggcaccggtgccagctaa
DBGET
integrated database retrieval system
