KEGG   Xiphophorus couchianus (Monterrey platyfish): 114154862
Entry
114154862         CDS       T05908                                 
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
xco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114154862 (top3b)
   03460 Fanconi anemia pathway
    114154862 (top3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xco03032]
    114154862 (top3b)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114154862 (top3b)
Enzymes [BR:xco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     114154862 (top3b)
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Topoisomerases
   114154862 (top3b)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     114154862 (top3b)
   FA (Fanconi anemia) pathway
     114154862 (top3b)
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_TOP3B Toprim
Other DBs
NCBI-GeneID: 114154862
NCBI-ProteinID: XP_027890109
LinkDB
Position
12:32427114..32446324
AA seq 858 aa
MRTVLMVAEKPSLAQSIAKILSKGSCTSRKGLNGACSVHEYNGSFQSQTVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEARGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKGIVRDQTVFRAKFSSITDTDIWNAMNRLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVLQAKVFKGKDTPLTLDWNRVRVFDREVGQMFVNLAKISKEAKVESVSKKEKVKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTLYHENFDLKGNLKQQINN
TIWAEEVKALLSTGINRPRKGNDAGDHPPITPMRSASEGELGSDGWRLYEYITRHFIATV
SQDCQYLQTTIDFKIGTEAFSCSGKTLISPGYTTVMPWQGIPLEEAMPACDCGDTFTVEE
IKLVEQQTSPPHYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVENGRRLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKANYQQVLQHTLEIFKRKFHYFVDSI
TSMDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDDFELVLWTSGARGKSYPLCPYCFSHPPFRDMKKGMGCNECTHPTCQHSLNA
LGIGQCVECDSGILVLDPTSGPKWRMACNKCNVVVHFFEHAHKIQVAQESCDACDASLVA
VDFNKTRTPLPDSETQHTGCVFCDPVFQDVVELKHATMRHSMHRGGGARRGGRGRGRGRR
GNPKKPKDKMAALAAYFV
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgagaactgttctgatggtggcagagaaaccttctttggcccagtcgatcgccaaaatt
ctctccaaaggaagctgtaccagtcggaaagggctcaatggagcatgctcagtgcatgaa
tacaacggcagttttcaaagccagaccgtccgctttaagatgacctctgtgtgtggccat
gtgatgagtctggactttattggaaaatataacaactgggacaaagtagatcctgcagag
ctgttcagcaaagctccaacagaaaagaaggaggccaatcctaaactcagcatggtgaag
tttctccaggttgaagccagaggctgtgactatgtggttttatggctggactgtgataaa
gaaggcgagaacatctgttttgaggttctagatgccatccaaccagtgatgaataaaggc
attgtcagggatcagactgtgttccgggccaaattcagttccataaccgacacagacatc
tggaacgccatgaaccgcctcggagaacccaacaggaacgaagcgctgtcggtggatgct
cgtcaggagttggacctgcgaatcggctgcgccttcacacgattccagacaaagtacttc
cagggcaaatatgggaatttagactcttccctgatctcttttggaccttgtcaaacccca
acacttggtttctgtgtggagcgccatgataagattcagtccttcaaacctgaaacatac
tgggttctccaggcaaaggtgttcaaagggaaggacacgcctctgactctggactggaac
agggtcagggtctttgacagggaggtggggcagatgtttgtcaatctggccaagatttcc
aaagaggccaaggtggagtcagtgagtaaaaaagaaaaggtcaaacagaggcctcaggcc
ttgaatactgtggagatgctgagagtggctagctctgctttaggtatgggtccccagcat
accatgcagattgcagagcgcctctatacgcagggctacatcagctacccacgtactgaa
accaccctctaccatgagaactttgacctgaagggaaacttgaagcagcagatcaacaac
accatctgggcagaagaggtaaaagcgcttctttcaaccggcataaaccggcccaggaag
ggaaatgatgcaggagaccatccacccattacccccatgcgttctgcatcagagggggaa
ctggggagtgatggctggcgcctgtatgagtacatcacacgacatttcattgctactgtc
agtcaggactgccagtacctacaaaccactatagacttcaaaattggcacagaggccttc
tcgtgtagcgggaaaactctcatctcaccaggttacaccacagtgatgccctggcagggc
attcctctggaggaagcgatgcccgcctgcgactgtggagacacttttacagtggaggag
atcaagctggtagagcagcagacgagccctcctcactacctgaccgaggcagaactcatc
acactcatggagaaacatggcattggtactgatgccagcatccccgtccacatcaacaac
gtctgtcaaaggaactatgtgacagtagagaatggacgcagactaaaacccaccaacctg
ggcattgtcttggtacatggctactacaaaacagatgcagaactggttctccctaccatc
cgcagcgctgtggagaagcagctgaacctcatcgctcaggggaaagctaactaccagcag
gtgctgcagcacacactggagatcttcaagaggaagtttcactactttgttgattccatc
accagtatggatgaactgatggaggtctccttctcccccatcgctgccactgggaagccc
ctctcccgctgtggcaagtgccaccgtttcatgaaatacatccaggccaagcctagccgg
ctccactgctcccactgtgacgagacctacagcctcccgcagaatggagccatcaagctg
tacaaggagctccgctgcccactggatgactttgagctggtgctgtggacgtctggggcc
cggggcaagagctacccactgtgtccctactgcttcagccacccccctttcagggacatg
aagaaaggtatgggctgtaatgaatgcacccatccaacctgtcagcactccctcaacgct
ctgggcatcggccagtgtgtggagtgtgacagtggcatcttggtgctagatcccacatct
ggaccaaaatggagaatggcttgcaacaagtgcaatgtagtggtgcacttctttgagcat
gcacacaaaatccaggtggcgcaggagagctgtgatgcttgtgacgcctcacttgttgct
gtggacttcaacaagacccgcactccacttcctgacagcgagacccaacacaccggctgt
gttttctgcgatcccgtcttccaggacgtggtggagctcaaacacgccactatgaggcac
tccatgcaccgaggcgggggggcgaggcgaggaggccgaggacggggcaggggacgccgt
ggcaaccctaaaaaacccaaagataaaatggcagctctggcagcatactttgtgtaa

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114160058
Entry
114160058         CDS       T05908                                 
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440  Homologous recombination
xco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    114160058 (top3a)
   03460 Fanconi anemia pathway
    114160058 (top3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xco03032]
    114160058 (top3a)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114160058 (top3a)
Enzymes [BR:xco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     114160058 (top3a)
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Topoisomerases
   114160058 (top3a)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     114160058 (top3a)
   FA (Fanconi anemia) pathway
     114160058 (top3a)
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_GRF Toprim Zn_ribbon_Top1 Zn_ribbon_GRF_2 zf-C2H2_10
Other DBs
NCBI-GeneID: 114160058
NCBI-ProteinID: XP_027898230
LinkDB
Position
16:18748957..18770218
AA seq 1022 aa
MLIAHLLGRPTLRSGLLRARTGFSWATRSRWCSDAAQGADMIRSRAQIKRVLCVAEKNDA
AKGISEIMSGGRARRREGFSKFNKIYEYEYNLFGQNVTVTMTSVSGHLLGLEFKAPFQKW
HSCSPVLLFDAEVEKICPDNMVQIKRTLEKEARQCQALVIWTDCDREGENIGFEIIDVCK
AVKPNLQIFRAKFSEITPNSIRRACETLTEPDCNVSDAVDVRQELDLRIGASFTRFQTLR
LQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDSVEFSW
KRNRLFHHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAK
ETMKIAEKLYTRGLISYPRTETNIFPANLPLAPLVEQQAQSPEWGTFAQRVLDQPGGPNP
RQGKNSDQAHPPIHPTKYTNTLQGNEARVYEFIVRHFLACVSQDALGHETVVEIEIAREK
FSTSGLMIIARNYLDVYPYERWSTKLLPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLI
SLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPNL
RAELEADLKLVSEGRKDKRSVLQHHIQKYKAVFIESVRKAKKLDEALSPYLGAALELPDA
EQLDMEVPLPVRKCPNCGRDMVLKKKREGNSRFLACVGFPACKTAVWFPDAVLEVSRDDG
VCPTCQPSPIHLLKFKFRRGSVPPMMPLEFVGCIGGCDETLREVLDLKYLGGGGRGGEGR
SRGPGDATGWSGGGGDDAPPPRPPRPPPPRPSMPPVPAWTHQPRPPPGGSGVRVEASSDV
IVCNCGQDALLLTVRKDGLNQGRQFYKCNSGACNFFLWADQPNQQGAPPQSRGPPLSAHR
SPQAPRASLGFGNTSGGGRGHTVCNCNDNAVTRTVQKDGPNKGRMFHTCGKPRDQQCGFF
QWADENVPPPGGGFNAFNEDGGKTGRKTAGDGATGRAPAARKPRTCGICHMPGHTRVTCP
QR
NT seq 3069 nt   +upstreamnt  +downstreamnt
atgctgatagcgcacctcctcggcagacccacgcttcgatcgggactactgcgggcgagg
acgggcttttcctgggcgacacggagccgctggtgctcggacgcggcgcagggggcagac
atgattcgcagccgagctcagatcaagcgggtcctctgcgtggccgagaagaacgatgca
gccaaaggcatctctgagatcatgtctggcggcagagccaggaggagagaaggattttcg
aagttcaataaaatatatgagtatgaatataatctttttggccagaatgtgacagtgaca
atgacctcagtgtcaggccatttgctgggtctggagttcaaagcgcctttccagaaatgg
cacagctgcagtcccgtgttgctgtttgatgcagaggtagagaagatttgcccggacaac
atggttcaaatcaagcggactctggagaaggaagcgaggcagtgccaggcgctggtcatc
tggactgactgtgaccgggagggagaaaacattggcttcgaaatcattgacgtttgcaaa
gcagtaaaacccaatttgcaaatctttcgagcgaagttttcggagatcactcccaactcg
attcgaagagcgtgtgagacgctgacggagcccgactgcaacgtcagcgacgccgtcgat
gtccggcaggagctggatctgcggataggtgcgtcctttacccggttccagacgcttcgc
ctgcagaagatcttccccgagtctctggccaatcagctgatctcatacggcagctgtcag
tttcccaccctgggatttgtggtggagcgcttcaaagccattcaggcttttatacccgag
actttctacaagatcaaagtgctccatgaggtggaagaggacagtgttgagttcagctgg
aagagaaaccgtctcttccatcacacagcttgtctggtgctctaccagatctgcatggag
gatcccatagcaacagtcacctcagtaacaagcaaacccaagagcaaatggagaccactg
cctttggacactgtggaactggagaaactggcgtctaggaagctcagaataaatgccaaa
gagacgatgaagattgctgaaaagctttatactcgagggttaatcagctatcctcgcaca
gaaaccaacatatttcctgcaaaccttcccctggcgcccctggtggagcagcaggcgcag
agtccggagtgggggacgtttgcccagcgggttctggaccagcctgggggccccaaccca
cggcagggcaaaaactctgaccaggcccaccctcccatacaccccaccaagtacaccaac
acgctgcagggcaacgaagcacgtgtgtatgagttcattgtgcggcacttcctggcctgc
gtttcccaggacgctttggggcacgagacggtggtggaaatagaaattgctcgggagaag
ttctccacatctggactcatgattattgcaaggaattacctggacgtctacccgtacgag
aggtggagcacaaagctgttaccagtttatgagcagggctcccagttccagccctccgcc
attgagatggtggacggacagacgagtccgcctcagctgctgaccgaagccgacctcata
tccctgatggagaagcacggcatcggaacggatgcgacccacgcagaacacatcgagacc
attaagagtcgcatgtacgtcggtctgactgcggaccagaggtttctccccggggagctc
ggcatgggactagtggagggttacaactccatgggctacgagatgtcgaaacccaacctg
cgcgccgagctggaggccgacctcaagctggtgtcggagggcaggaaggacaagcggagc
gttctgcagcaccacatccagaaatacaaagctgtcttcatagagtccgtgaggaaggcg
aagaagttagacgaggctctgtcgccgtacctgggcgcagctctggagctgcccgacgca
gagcagctggacatggaggtcccgctgccggtcaggaagtgtcctaactgtgggcgggac
atggtgctgaagaagaagagggagggaaacagtaggtttctggcctgtgtgggcttcccg
gcctgtaagacggccgtctggttcccggacgcggtgctggaggtcagcagggatgacggg
gtttgtcccacatgtcaaccgagccccattcacctgctgaagtttaagttccgcagaggc
agcgttcctcccatgatgcctctggaatttgttggctgcatcggtggctgcgacgagacg
ctcagagaggttttggacctcaagtaccttggaggaggaggaagaggaggagaaggacga
agcagaggaccgggagatgctacaggatggagtggaggaggaggagatgatgctccgcct
ccgaggcccccgagaccgccaccgcccagaccctccatgcctcctgttcccgcctggacc
caccagcccagacctccaccaggtggcagtggcgtccgcgtggaagccagtagcgacgtg
atcgtctgcaactgcggccaggacgcgctcctcctgacggtgcgcaaagacggcctcaac
caaggccgccagttctacaagtgcaactccggggcctgcaacttcttcctgtgggcggat
cagccgaatcagcagggggcgccgccgcagagcagaggacccccgctgtcggcgcatagg
tctcctcaggctcccagggcctcgctggggttcgggaacacgtccggaggcggcagaggg
cacaccgtgtgcaactgcaacgacaacgccgtgacccgcacggtgcagaaggacggaccc
aacaagggccgcatgttccacacctgcgggaagccgagagaccagcagtgcggcttcttc
cagtgggctgatgagaacgtacctccaccaggtggaggatttaacgcatttaacgaagac
ggagggaagacggggaggaagacggcaggagacggcgccaccggcagagctcccgctgcg
aggaaaccgcggacctgcggcatctgccacatgccgggacacacccgcgtcacctgccct
cagcggtga

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