Xiphophorus couchianus (Monterrey platyfish): 114154862
Help
Entry
114154862 CDS
T05908
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114154862 (top3b)
03460 Fanconi anemia pathway
114154862 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114154862 (top3b)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114154862 (top3b)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
114154862 (top3b)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Topoisomerases
114154862 (top3b)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
114154862 (top3b)
FA (Fanconi anemia) pathway
114154862 (top3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
114154862
NCBI-ProteinID:
XP_027890109
UniProt:
A0A3B5LUS0
LinkDB
All DBs
Position
12:32427114..32446324
Genome browser
AA seq
858 aa
AA seq
DB search
MRTVLMVAEKPSLAQSIAKILSKGSCTSRKGLNGACSVHEYNGSFQSQTVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEARGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKGIVRDQTVFRAKFSSITDTDIWNAMNRLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVLQAKVFKGKDTPLTLDWNRVRVFDREVGQMFVNLAKISKEAKVESVSKKEKVKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTLYHENFDLKGNLKQQINN
TIWAEEVKALLSTGINRPRKGNDAGDHPPITPMRSASEGELGSDGWRLYEYITRHFIATV
SQDCQYLQTTIDFKIGTEAFSCSGKTLISPGYTTVMPWQGIPLEEAMPACDCGDTFTVEE
IKLVEQQTSPPHYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVENGRRLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLNLIAQGKANYQQVLQHTLEIFKRKFHYFVDSI
TSMDELMEVSFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDDFELVLWTSGARGKSYPLCPYCFSHPPFRDMKKGMGCNECTHPTCQHSLNA
LGIGQCVECDSGILVLDPTSGPKWRMACNKCNVVVHFFEHAHKIQVAQESCDACDASLVA
VDFNKTRTPLPDSETQHTGCVFCDPVFQDVVELKHATMRHSMHRGGGARRGGRGRGRGRR
GNPKKPKDKMAALAAYFV
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgttctgatggtggcagagaaaccttctttggcccagtcgatcgccaaaatt
ctctccaaaggaagctgtaccagtcggaaagggctcaatggagcatgctcagtgcatgaa
tacaacggcagttttcaaagccagaccgtccgctttaagatgacctctgtgtgtggccat
gtgatgagtctggactttattggaaaatataacaactgggacaaagtagatcctgcagag
ctgttcagcaaagctccaacagaaaagaaggaggccaatcctaaactcagcatggtgaag
tttctccaggttgaagccagaggctgtgactatgtggttttatggctggactgtgataaa
gaaggcgagaacatctgttttgaggttctagatgccatccaaccagtgatgaataaaggc
attgtcagggatcagactgtgttccgggccaaattcagttccataaccgacacagacatc
tggaacgccatgaaccgcctcggagaacccaacaggaacgaagcgctgtcggtggatgct
cgtcaggagttggacctgcgaatcggctgcgccttcacacgattccagacaaagtacttc
cagggcaaatatgggaatttagactcttccctgatctcttttggaccttgtcaaacccca
acacttggtttctgtgtggagcgccatgataagattcagtccttcaaacctgaaacatac
tgggttctccaggcaaaggtgttcaaagggaaggacacgcctctgactctggactggaac
agggtcagggtctttgacagggaggtggggcagatgtttgtcaatctggccaagatttcc
aaagaggccaaggtggagtcagtgagtaaaaaagaaaaggtcaaacagaggcctcaggcc
ttgaatactgtggagatgctgagagtggctagctctgctttaggtatgggtccccagcat
accatgcagattgcagagcgcctctatacgcagggctacatcagctacccacgtactgaa
accaccctctaccatgagaactttgacctgaagggaaacttgaagcagcagatcaacaac
accatctgggcagaagaggtaaaagcgcttctttcaaccggcataaaccggcccaggaag
ggaaatgatgcaggagaccatccacccattacccccatgcgttctgcatcagagggggaa
ctggggagtgatggctggcgcctgtatgagtacatcacacgacatttcattgctactgtc
agtcaggactgccagtacctacaaaccactatagacttcaaaattggcacagaggccttc
tcgtgtagcgggaaaactctcatctcaccaggttacaccacagtgatgccctggcagggc
attcctctggaggaagcgatgcccgcctgcgactgtggagacacttttacagtggaggag
atcaagctggtagagcagcagacgagccctcctcactacctgaccgaggcagaactcatc
acactcatggagaaacatggcattggtactgatgccagcatccccgtccacatcaacaac
gtctgtcaaaggaactatgtgacagtagagaatggacgcagactaaaacccaccaacctg
ggcattgtcttggtacatggctactacaaaacagatgcagaactggttctccctaccatc
cgcagcgctgtggagaagcagctgaacctcatcgctcaggggaaagctaactaccagcag
gtgctgcagcacacactggagatcttcaagaggaagtttcactactttgttgattccatc
accagtatggatgaactgatggaggtctccttctcccccatcgctgccactgggaagccc
ctctcccgctgtggcaagtgccaccgtttcatgaaatacatccaggccaagcctagccgg
ctccactgctcccactgtgacgagacctacagcctcccgcagaatggagccatcaagctg
tacaaggagctccgctgcccactggatgactttgagctggtgctgtggacgtctggggcc
cggggcaagagctacccactgtgtccctactgcttcagccacccccctttcagggacatg
aagaaaggtatgggctgtaatgaatgcacccatccaacctgtcagcactccctcaacgct
ctgggcatcggccagtgtgtggagtgtgacagtggcatcttggtgctagatcccacatct
ggaccaaaatggagaatggcttgcaacaagtgcaatgtagtggtgcacttctttgagcat
gcacacaaaatccaggtggcgcaggagagctgtgatgcttgtgacgcctcacttgttgct
gtggacttcaacaagacccgcactccacttcctgacagcgagacccaacacaccggctgt
gttttctgcgatcccgtcttccaggacgtggtggagctcaaacacgccactatgaggcac
tccatgcaccgaggcgggggggcgaggcgaggaggccgaggacggggcaggggacgccgt
ggcaaccctaaaaaacccaaagataaaatggcagctctggcagcatactttgtgtaa
Xiphophorus couchianus (Monterrey platyfish): 114160058
Help
Entry
114160058 CDS
T05908
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114160058 (top3a)
03460 Fanconi anemia pathway
114160058 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114160058 (top3a)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114160058 (top3a)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
114160058 (top3a)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Topoisomerases
114160058 (top3a)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
114160058 (top3a)
FA (Fanconi anemia) pathway
114160058 (top3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
114160058
NCBI-ProteinID:
XP_027898230
LinkDB
All DBs
Position
16:18748957..18770218
Genome browser
AA seq
1022 aa
AA seq
DB search
MLIAHLLGRPTLRSGLLRARTGFSWATRSRWCSDAAQGADMIRSRAQIKRVLCVAEKNDA
AKGISEIMSGGRARRREGFSKFNKIYEYEYNLFGQNVTVTMTSVSGHLLGLEFKAPFQKW
HSCSPVLLFDAEVEKICPDNMVQIKRTLEKEARQCQALVIWTDCDREGENIGFEIIDVCK
AVKPNLQIFRAKFSEITPNSIRRACETLTEPDCNVSDAVDVRQELDLRIGASFTRFQTLR
LQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDSVEFSW
KRNRLFHHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRINAK
ETMKIAEKLYTRGLISYPRTETNIFPANLPLAPLVEQQAQSPEWGTFAQRVLDQPGGPNP
RQGKNSDQAHPPIHPTKYTNTLQGNEARVYEFIVRHFLACVSQDALGHETVVEIEIAREK
FSTSGLMIIARNYLDVYPYERWSTKLLPVYEQGSQFQPSAIEMVDGQTSPPQLLTEADLI
SLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPNL
RAELEADLKLVSEGRKDKRSVLQHHIQKYKAVFIESVRKAKKLDEALSPYLGAALELPDA
EQLDMEVPLPVRKCPNCGRDMVLKKKREGNSRFLACVGFPACKTAVWFPDAVLEVSRDDG
VCPTCQPSPIHLLKFKFRRGSVPPMMPLEFVGCIGGCDETLREVLDLKYLGGGGRGGEGR
SRGPGDATGWSGGGGDDAPPPRPPRPPPPRPSMPPVPAWTHQPRPPPGGSGVRVEASSDV
IVCNCGQDALLLTVRKDGLNQGRQFYKCNSGACNFFLWADQPNQQGAPPQSRGPPLSAHR
SPQAPRASLGFGNTSGGGRGHTVCNCNDNAVTRTVQKDGPNKGRMFHTCGKPRDQQCGFF
QWADENVPPPGGGFNAFNEDGGKTGRKTAGDGATGRAPAARKPRTCGICHMPGHTRVTCP
QR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgctgatagcgcacctcctcggcagacccacgcttcgatcgggactactgcgggcgagg
acgggcttttcctgggcgacacggagccgctggtgctcggacgcggcgcagggggcagac
atgattcgcagccgagctcagatcaagcgggtcctctgcgtggccgagaagaacgatgca
gccaaaggcatctctgagatcatgtctggcggcagagccaggaggagagaaggattttcg
aagttcaataaaatatatgagtatgaatataatctttttggccagaatgtgacagtgaca
atgacctcagtgtcaggccatttgctgggtctggagttcaaagcgcctttccagaaatgg
cacagctgcagtcccgtgttgctgtttgatgcagaggtagagaagatttgcccggacaac
atggttcaaatcaagcggactctggagaaggaagcgaggcagtgccaggcgctggtcatc
tggactgactgtgaccgggagggagaaaacattggcttcgaaatcattgacgtttgcaaa
gcagtaaaacccaatttgcaaatctttcgagcgaagttttcggagatcactcccaactcg
attcgaagagcgtgtgagacgctgacggagcccgactgcaacgtcagcgacgccgtcgat
gtccggcaggagctggatctgcggataggtgcgtcctttacccggttccagacgcttcgc
ctgcagaagatcttccccgagtctctggccaatcagctgatctcatacggcagctgtcag
tttcccaccctgggatttgtggtggagcgcttcaaagccattcaggcttttatacccgag
actttctacaagatcaaagtgctccatgaggtggaagaggacagtgttgagttcagctgg
aagagaaaccgtctcttccatcacacagcttgtctggtgctctaccagatctgcatggag
gatcccatagcaacagtcacctcagtaacaagcaaacccaagagcaaatggagaccactg
cctttggacactgtggaactggagaaactggcgtctaggaagctcagaataaatgccaaa
gagacgatgaagattgctgaaaagctttatactcgagggttaatcagctatcctcgcaca
gaaaccaacatatttcctgcaaaccttcccctggcgcccctggtggagcagcaggcgcag
agtccggagtgggggacgtttgcccagcgggttctggaccagcctgggggccccaaccca
cggcagggcaaaaactctgaccaggcccaccctcccatacaccccaccaagtacaccaac
acgctgcagggcaacgaagcacgtgtgtatgagttcattgtgcggcacttcctggcctgc
gtttcccaggacgctttggggcacgagacggtggtggaaatagaaattgctcgggagaag
ttctccacatctggactcatgattattgcaaggaattacctggacgtctacccgtacgag
aggtggagcacaaagctgttaccagtttatgagcagggctcccagttccagccctccgcc
attgagatggtggacggacagacgagtccgcctcagctgctgaccgaagccgacctcata
tccctgatggagaagcacggcatcggaacggatgcgacccacgcagaacacatcgagacc
attaagagtcgcatgtacgtcggtctgactgcggaccagaggtttctccccggggagctc
ggcatgggactagtggagggttacaactccatgggctacgagatgtcgaaacccaacctg
cgcgccgagctggaggccgacctcaagctggtgtcggagggcaggaaggacaagcggagc
gttctgcagcaccacatccagaaatacaaagctgtcttcatagagtccgtgaggaaggcg
aagaagttagacgaggctctgtcgccgtacctgggcgcagctctggagctgcccgacgca
gagcagctggacatggaggtcccgctgccggtcaggaagtgtcctaactgtgggcgggac
atggtgctgaagaagaagagggagggaaacagtaggtttctggcctgtgtgggcttcccg
gcctgtaagacggccgtctggttcccggacgcggtgctggaggtcagcagggatgacggg
gtttgtcccacatgtcaaccgagccccattcacctgctgaagtttaagttccgcagaggc
agcgttcctcccatgatgcctctggaatttgttggctgcatcggtggctgcgacgagacg
ctcagagaggttttggacctcaagtaccttggaggaggaggaagaggaggagaaggacga
agcagaggaccgggagatgctacaggatggagtggaggaggaggagatgatgctccgcct
ccgaggcccccgagaccgccaccgcccagaccctccatgcctcctgttcccgcctggacc
caccagcccagacctccaccaggtggcagtggcgtccgcgtggaagccagtagcgacgtg
atcgtctgcaactgcggccaggacgcgctcctcctgacggtgcgcaaagacggcctcaac
caaggccgccagttctacaagtgcaactccggggcctgcaacttcttcctgtgggcggat
cagccgaatcagcagggggcgccgccgcagagcagaggacccccgctgtcggcgcatagg
tctcctcaggctcccagggcctcgctggggttcgggaacacgtccggaggcggcagaggg
cacaccgtgtgcaactgcaacgacaacgccgtgacccgcacggtgcagaaggacggaccc
aacaagggccgcatgttccacacctgcgggaagccgagagaccagcagtgcggcttcttc
cagtgggctgatgagaacgtacctccaccaggtggaggatttaacgcatttaacgaagac
ggagggaagacggggaggaagacggcaggagacggcgccaccggcagagctcccgctgcg
aggaaaccgcggacctgcggcatctgccacatgccgggacacacccgcgtcacctgccct
cagcggtga
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integrated database retrieval system
