Xiphophorus couchianus (Monterrey platyfish): 114155080
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Entry
114155080 CDS
T05908
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
114155080 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114155080 (polb)
Enzymes [BR:
xco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
114155080 (polb)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
114155080 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
114155080 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
HHH_2
NTP_transf_2
Cdd1
DUF4806
Motif
Other DBs
NCBI-GeneID:
114155080
NCBI-ProteinID:
XP_027890557
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All DBs
Position
12:9660970..9666671
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AA seq
337 aa
AA seq
DB search
MSKRKAPQESLNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTIAKYPNKIKNGEEAK
KLDGVGAKIAEKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVK
TLDDLKKVEHKLNHHQKIGLKYFEEFEKRIPRVEMEKMEVLILGELKKIDPEYIGTICGS
YRRGAASSGDIDILLTHPSYTSQTEKQPKLLHAVVDHLESVGFVTDTLSKGDTKFMGVCQ
LQDTDDDEEEEHLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTI
RPLGVTGMAGEPLLVDSERDIFEYIQYRYREPKDRSE
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaggaaagctccacaggagtccctaaatgagggaataactgactttcttgtc
gaactggctaactacgagaaaaatgtcaacagggcaatacataagtacaatgcatacagg
aaagcagcatccaccattgccaagtatcctaacaagattaaaaatggagaagaggcgaag
aaactggatggagttggtgctaaaatagcagaaaagattgatgagttcttacaaactgga
aaactaagaaaacttgaaaagatcagaaatgatgacaccagctcttccataaatttcctc
accagagtcaccggaatcggacctgctgctgctaggaagtttgttgaagagggggtgaag
acattggatgatttgaaaaaggtagagcacaagctaaatcaccaccaaaagattggactc
aagtactttgaagaatttgagaaaaggatcccaagagttgaaatggaaaagatggaggta
cttattctgggggaattaaagaaaattgatccagaatatatcggaacaatctgtggaagc
tataggagaggtgcagcatcgagtggtgatattgatattttactgactcacccaagttac
acttctcaaacagagaagcagccaaagcttcttcatgctgtggtcgatcatttggagtcc
gttgggtttgtgaccgacactctgtccaaaggagacaccaagttcatgggagtctgccag
ctgcaggacactgatgatgacgaagaggaagaacatcttcacagacgcattgatattagg
ttaattcccaaggaccagtactactgtggagttctgtatttcactggaagtgacatcttt
aataagaacatgaggacacacgctctggagaagggcttcactctgaacgagtacaccatc
aggccacttggtgtcactggaatggcgggagagcctctgttggtggacagtgagagagac
atctttgaatacatccagtacagatacagagagccgaaggatcgtagcgagtga
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