Xiphophorus couchianus (Monterrey platyfish): 114160921
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Entry
114160921 CDS
T05908
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04115
p53 signaling pathway
xco04210
Apoptosis
xco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
114160921 (apaf1)
04115 p53 signaling pathway
114160921 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
114160921 (apaf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
APAF1_C
NB-ARC
APAF-1-like_WHD
ANAPC4_WD40
CARD
NBCH_WD40
RMC1_N
Ge1_WD40
WD40_like
CARD_2
AAA_16
NACHT
AAA_22
Utp8
Motif
Other DBs
NCBI-GeneID:
114160921
NCBI-ProteinID:
XP_027899649
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All DBs
Position
17:6102490..6138260
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AA seq
1299 aa
AA seq
DB search
MALQERTRRSLLRLRHQLEQDIKPQDLMDHMISDGVITVDEEEKVRIKPTRKDQAAALIE
LLLRKDDRSFISFYNALVKETYYDLAKPLYQDLPGVSFNGRKGSFDSSETSVQIMLSEGG
VPQRPVVFVSRPELLNQVRMKLDLLQKDAGGWVTVFGMAGSGKSVLAAEAVRDQRLIEEC
FPNGIHWLSIGQLDKSDLLVKIQSLCFRLEQNLDSQSQQRPPTSLDEAKERLRFLMLRRF
PRSLLILDDIWDSSVLKVFDIHCRILLTTRNRSLTDSVSGAKYEVEVESGLDDRKALEIL
ALYTKMNQNALPVEARDIVKECKGSPLVVSLIGALLKDKPNRWDYYLRQLRQKQFKRIRK
SSSYDYDALDQAMAASIEVLPDEHRELYKDLTVLQKDVKIPAKILCVLWDLEPEEVEDIL
QEFVNKSLLFVDNNSRLNLYYLHDLQLDFLVEQNRDQIESLHSKVVNQYNHHYREAAPTS
GDEGRLYWIRFLTYHLAKAQMFQELYSLMFSLDWVRMKAKVMGPAPLINDYMEYGPILDK
ENSEVCSQFQEFLSLNGHHLEQRPFPDVVQLALSQPHSSAVYRQAREQALHPANAGKLYF
ELINKRSIENLSRLVIHPHLGSIYSACFSHDGTKIASCGASKTLKVFKSTSGEKLIEIQA
HDEEVLCCTFSPDDHLLATCSSDRKVKVWNIQQGKLLRTFEEEHEEQVNHCEFTNMSQRL
LLATCSNDSILNVKLWNLNKPSSQNTMFGHFEPVNHCCFSPDDAYLSTSSNDGTVKLFQV
SAANEWKTIDVKSFLSESDDEDVLVKCSTWTADGKRIICAARNAALVFDVQTSDMLLDIK
TNRLSTVQYCHACPASNLLALAFSNYAIELWDLEEKKKRADCSGHLSWVQQVQFSKDGSQ
LLSCSDDQTIRLWETEKVHTSSAVSLKRDSDVLFDGEEIIVSAADNCNRLQVRDGRTGSV
LFQSQELPFRIRSTCMCRNPSAVVLGQENGNVQVSGLTASRVLRTIGCRIRQLLTSCREV
LLAVAQCTGRVQVLALPSGKLLATLLGHTKTVLHFQFCQNGQTLITSSEDTTIRVWKWKS
GECKVLQGHKEQVRCFSLLSDSANDSRLLSWSFDGTVKVWDIESGEKLQDIKAHQGAILS
CHVSPDRCLFATTSADKTTKLWSCESWQCVFTLRGHQDCVRSCRFSWDSKRLATGDDNGE
IRIWSVKDGSLLKVCSQESKDATDSVHGGWVTDLHFSPNNSVLVSTGGYIKWWDVARGES
LQTFYPTGSALKKIHVSPDFSTFVTIDNIGILYILKRVA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcaggagcggacccggagaagtctgctgcgcttgcgccaccaactggagcag
gacatcaagccacaggacctcatggaccacatgatcagcgatggtgtgatcactgtggat
gaggaggagaaggtccggattaagcccaccagaaaagaccaagctgcagcactgatcgag
ctgctgctgaggaaagatgatcgctccttcatttctttctataatgcactggttaaagaa
acgtactacgatctggccaaaccgctgtatcaagacttaccaggtgtctccttcaatgga
cgaaagggctcctttgacagctccgaaacttccgttcaaattatgctgagtgaaggtggc
gtcccacagaggcctgtggtgtttgtgagcagaccagagctgctgaatcaggtcaggatg
aaacttgatttgcttcagaaagatgccggcggctgggttacggtgttcggcatggccggg
tcaggaaagtctgtgctcgctgccgaggctgtcagagaccagagactcatcgaagagtgt
ttccccaatgggattcattggctgtccatcggtcagctggacaaatccgacctgctggtg
aagattcagtcattgtgttttcgcctggaacagaacctggattcccaatcgcaacagcgg
ccgcccacctctctggatgaagcaaaggagcgcctgcgcttcctgatgctgcgcaggttt
cccagatctctattaatcctcgatgacatctgggatagctcggtgctcaaagtgtttgat
attcactgtcgaattcttctgaccaccagaaacagaagcctcactgattctgttagcggt
gccaagtatgaggtggaagtagaaagtggtctggacgacagaaaggcgctggagatcctg
gccctgtacactaaaatgaatcaaaacgcgcttcctgtggaggctcgcgacatcgtcaaa
gaatgtaaaggctctcctctggttgtgtctctgatcggcgctctgctcaaagacaaaccc
aaccggtgggattactacctccgccagctgcggcagaagcagttcaagcgcataaggaag
tcttcgtcctacgactacgacgccttggatcaggccatggctgcaagcatcgaggtttta
cctgacgaacatcgggaactctacaaagacctgactgtgctgcaaaaggacgtcaagatc
cccgctaagatattgtgtgttttgtgggatttggagccagaggaagtggaagacattctc
caagagtttgtcaacaaatccctgctttttgtagacaacaacagtagactgaacctgtac
taccttcacgacctccagttggacttcctggtggagcagaaccgagatcagatagagagt
cttcacagtaaggtggtgaaccagtacaaccatcactacagagaggctgctcccacctct
ggagacgagggtcgtctttattggatcagatttctcacctaccacttggccaaagctcag
atgttccaggagttgtattcgctcatgttctcgctggactgggtcaggatgaaggcgaag
gtaatgggtccagcgcccctcatcaacgactacatggagtacggacccattctggacaaa
gagaacagtgaagtttgcagccagttccaggagtttctgtcgctgaacggccaccaccta
gagcagcgtccgttccccgatgtcgtgcagctcgctctgtctcagccgcactcctccgcg
gtctacagacaggctcgggagcaggcgctgcacccggccaacgctgggaagctctacttt
gaattaataaataagagaagcatcgaaaatctgtcccgtttggtgatccaccctcacctg
ggctccatctactctgcctgcttctcccacgatggaaccaaaatcgcttcttgtggagcc
agcaaaaccctgaaggtatttaaaagtacctcaggtgagaagctgatagagatccaggct
cacgatgaagaagttctctgctgcaccttctcccctgatgaccatcttctagcaacctgc
tcaagtgaccggaaagtcaaggtgtggaacatccagcaaggcaaactactgaggaccttt
gaagaggagcatgaagagcaggtgaaccactgcgagttcaccaacatgtcacagcgcctc
ctactggccacatgctccaatgacagcatcttaaatgtcaagctttggaatctgaacaag
ccgtcgtctcagaacaccatgtttggtcactttgagccggtgaaccactgctgtttctct
cctgatgatgcttatttgtccacttcctccaatgacggcaccgttaagctgttccaggtg
tctgcagccaacgagtggaagacgatcgacgtgaagagcttcttgtcagaaagcgatgat
gaggacgttcttgtgaagtgcagcacctggaccgcagacggcaaacgcatcatatgtgcc
gccagaaatgctgccttggtgtttgacgtccagacgtcggacatgttgctggatatcaag
acgaatcgtctgagcacggtgcaatactgtcacgcctgtcctgccagtaacctgctggca
ttagcattctcaaattatgccattgagctgtgggatcttgaagaaaagaagaagcgggcg
gactgcagcggccacctgagctgggtccagcaggtccagttctctaaagacggctctcag
ctgctgtcctgctccgacgaccagacaatcaggttatgggagaccgagaaggtccacacg
tcctcggctgtcagcctgaagagagattcggacgttctctttgatggtgaggaaatcatc
gtgtcggctgcagacaactgcaacagactccaggtgcgtgatggcagaacaggatcggtg
ctgttccagtcacaggagctgcccttcagaatccggtctacatgtatgtgcaggaatcca
tctgcagtggttctgggacaagagaatggaaatgtgcaggtgtcagggctgacagctagt
cgggtgctgaggacgattggctgcaggatccgtcaactgctgacctcctgcagggaggtg
ttgctggctgtagctcagtgcacaggcagggtgcaggtgttggcgctgccctcagggaag
cttttagccactctgctgggacacaccaagaccgtgctccacttccagttctgccagaac
ggacaaactctcatcacctcatccgaggacaccaccatcagggtgtggaagtggaaatca
ggcgagtgtaaagtacttcagggtcacaaggagcaagttcgatgcttctctttgctctcc
gactcagcaaatgactcgagactgctctcctggtcctttgatggaaccgtgaaggtgtgg
gacattgagagcggagagaaactgcaggacatcaaggctcatcagggagccattctgtcc
tgtcacgtctcgccagacagatgtctctttgcgaccacctctgctgacaagaccactaag
ttgtggagctgcgaatcctggcagtgtgttttcaccctgagaggtcaccaagactgcgtc
cgaagctgccgtttctcctgggacagcaaacgcctcgctacgggagacgacaacggagag
atccgaatctggagtgttaaagatggctctttactgaaggtttgttcccaggaaagtaaa
gacgccactgattctgtacatggaggttgggtgactgatctgcacttctccccaaacaac
tctgtgctcgtttctaccggaggctacatcaagtggtgggacgtggcgagaggtgaatcc
ctgcagacgttttatccgacaggaagcgccctcaagaagatccacgtgtcgcccgacttc
tccaccttcgtcaccatcgacaacatcggtatcctctacatcctaaagagggtagcatga
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