Xanthomonas campestris pv. raphani: XCR_0650
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Entry
XCR_0650 CDS
T01872
Name
(GenBank) uracil DNA glycosylase superfamily protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XCR_0650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_0650
Enzymes [BR:
xcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
XCR_0650
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XCR_0650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF2026
Motif
Other DBs
NCBI-ProteinID:
AEL05569
UniProt:
G0CB15
LinkDB
All DBs
Position
674493..675920
Genome browser
AA seq
475 aa
AA seq
DB search
MQAMFSAEVEPGWSLDAWRALARAGWCAQVGPDAMDWNGGAQGGLLMGQGVLDLPAVVAG
PRVSAEFLQLASAVLCHRDVQRHAVLYRLLWRIASGERALLERATDVDVHRVMQWQKAVQ
RDSHKMKAFVRFRRLPGEEEEFVAWFEPEHWILDRVAPFFARRFAGMRWAILTPYRSVRW
NGEALTFGEGAARNQVPADDAQETLWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEAT
LLPELIREAGVRVREMAERAPEPVRRRVPAAPAALPAVAAQSLAQLRVAARDCRRCDLWQ
PATQTVFGEGPDDAAVMVIGEQPGDEEDLSGRPFVGPAGRLFNQALGELGIDRQRFYVTN
AVKHFRFEQRGKRRLHRNPERSHVQACNGWLQAERAQLRPAQIVCLGATAAQAVLGPGFR
LMQERGQWQRLDDGTPVLATVHPSWVLRQGTPSARDAGYRGFVADLGQLLQAPPA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcgatgttcagcgctgaagttgagccaggttggagtcttgatgcatggcgtgcg
ttggcgcgggcggggtggtgtgcgcaggtggggccggatgcgatggactggaatgggggc
gcgcagggtgggttgttgatggggcagggggtgctggatttgccggcggtggtggcgggg
ccgcgggtgtctgcggagtttctgcagctggcgtcggcggtgttgtgccatcgcgatgtg
cagcggcatgcggtgctgtaccggttgttgtggcggattgcctctggtgagcgggcgttg
ctggagcgggccaccgatgtggatgtgcatcgggtgatgcagtggcagaaggccgtgcag
cgcgattcgcacaagatgaaggccttcgtgcgcttccggcgcttgccgggtgaggaagaa
gaattcgtggcctggttcgagcccgaacactggatcctggaccgggtggcgccgttcttt
gcacggcggtttgccggcatgcgttgggcgattctcacgccgtaccgcagcgtgcgctgg
aatggcgaagcgttgacgtttggcgagggcgcggcgcgcaaccaggtgcccgccgacgat
gcgcaggagacgctgtggcgcacctactacgcgcacatcttcaatccggcgcggctcaat
cccaccatgatgcggcaggaaatgccgcagaaatactggaaaaacctgcccgaggccacg
ctgctgccggagctgatccgcgaggccggcgtgcgtgtgcgcgagatggccgaacgcgcg
cccgagccggtgcggcgacgggtacccgcagcgcctgcggcgctaccagccgtggctgcg
cagagtcttgcgcagctgcgcgtggccgcgcgcgattgccggcgctgcgacctatggcag
ccggcaacgcagacggtgttcggcgaaggaccggacgacgcggcggtgatggtgatcggc
gagcagccgggcgacgaagaggatctgagcgggcggccatttgtgggcccggccgggcgc
ttgttcaatcaggcgctcggtgagcttgggatcgatcggcagcgtttctatgtcaccaat
gcggtgaagcatttccgtttcgagcaacgcggcaagcgccgcttgcatcgcaatcccgaa
cgcagccatgtgcaagcgtgcaatggctggttgcaggccgagcgtgcgcagctgcggccc
gcacagattgtgtgcctgggcgcgacggcggcgcaggcggtattggggccgggctttcgc
ttgatgcaggagcgcgggcaatggcagcgcctggacgatggcacgccggtgctggccacg
gtgcatccatcctgggtcttgcggcagggcacgccgtcggcgcgcgacgccggctaccgc
ggatttgtcgcggatctgggccagctgttgcaggcaccgccagcgtaa
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