Xanthomonas citri subsp. citri A306: J151_03966
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Entry
J151_03966 CDS
T03584
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xct
Xanthomonas citri subsp. citri A306
Pathway
xct02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xct00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J151_03966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xct03021
]
J151_03966
Transcription machinery [BR:
xct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J151_03966
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AJD70371
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All DBs
Position
complement(4456165..4458042)
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AA seq
625 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSDDEAVDEDDDEDGDDEAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctgttgctcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgcagccgaagaagctgccgccgcgctgaccgcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctgagccaggtccaggcc
gcgttgggcgtgttcccgctctcgaccgaaatgctgctggccgactacgaagcgcacaag
gagggcaagaagcgtctggccgagatcgtggtcggcttcaacgacctgatcgaagaggcc
gatgcggccgctgctgcgctcgccgcggccggtccggtcgccgtgtccgacgatgaagca
gtcgacgaagacgacgacgaagacggcgatgacgaggccgccgaagaagaggccggcccg
accggtccggacccggtggaagtggccacgcgcatggagaacctggctaacgaatacgcc
aagttcaagaaggtctatgccaagaacggcgccgagcacaagctggtggtcaaggcgcgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctg
gtcacccagctgcgtggcgtggtcaatggcatcaaggaccacgagcgcaaggtgctgcac
ctggccaccaccgtggcccgcatgccgcgcaaggatttcatccgctcctgggaaggcaac
cagaccaacctggaatgggtggaggacgcactcaagcgcaagcagaagtggtcctcggcg
ctgcgcgacgtcaaggatcagatcatctccgagcagcagggctcgatcgagatggaaaag
gccaattacctgaccctgggcgagatcaaggaaatcagccgtgcgatggcctatggcgaa
gccaaggcgcgcaaggctaagaaggaaatggtcgaagccaacctgcgtctggtgatctcc
atcgccaagaagtacaccaaccgcggcctgcagttcctggatctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacg
tatgccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcacc
atccgtatcccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgccag
atgctccagcagttcggtcgcgaggccacgccggaggaactggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaggagccgatctcgatggaaacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggcc
ggcctcaccccgcgcgaggcgaaggtactgcgcatgcgcttcggtatcgacatgaacacc
gatcacacgctggaagaggtcggtaagcagttcgacgtcacccgtgagcggattcgtcag
atagaggccaaggcattgcgcaagctgcgtcacccgagccgttcggaacagctgcgctcg
ttcctggatatcgactga
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