Xanthomonas citri pv. citri MN10: J162_01878
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Entry
J162_01878 CDS
T03779
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
xcw
Xanthomonas citri pv. citri MN10
Pathway
xcw02024
Quorum sensing
xcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J162_01878
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
J162_01878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcw03019
]
J162_01878
03036 Chromosome and associated proteins [BR:
xcw03036
]
J162_01878
Messenger RNA biogenesis [BR:
xcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
J162_01878
Chromosome and associated proteins [BR:
xcw03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
J162_01878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AJZ04022
UniProt:
A0A0U4YKM5
LinkDB
All DBs
Position
1983603..1983881
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AA seq
92 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQSNEGNQAEDDDVEQ
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaggacccattcctcaatgcgctgcggcgcgagcgagtg
cccgtgtcggtgtatctggtcaatggcatcaagctgcagggcacgatcgagtcgttcgac
caattcgtggtcctgctgcgcaataccgtgagtcagatggtgtacaagcacgccatttcc
acggtggtgccggcgcgcaacgtgcgcgtggggcctggtggtgggtatgtgcaatccaat
gaaggcaatcaggcggaagatgacgacgtcgagcagtaa
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