Xanthomonas cucurbitae: EBN15_03745
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Entry
EBN15_03745 CDS
T06553
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xcz
Xanthomonas cucurbitae
Pathway
xcz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EBN15_03745 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcz03021
]
EBN15_03745 (rpoB)
03400 DNA repair and recombination proteins [BR:
xcz03400
]
EBN15_03745 (rpoB)
Enzymes [BR:
xcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EBN15_03745 (rpoB)
Transcription machinery [BR:
xcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EBN15_03745 (rpoB)
DNA repair and recombination proteins [BR:
xcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EBN15_03745 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
QHG86234
LinkDB
All DBs
Position
880093..884244
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPTKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG
RILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGPNLK
KGDNVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDNAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgt
tcgatcctcgaagtgccgttcctgcttgccatccaggtggactcctaccgcgaattcctg
caggaagacgtggaaccgaccaagcgcaaggacctcggtctgcatgccgctctgaagtcg
gtgttcccgatctccagctacagcggcaacgctgcgctggagtacgtgggctacaagttg
ggtcagccggtgttcgacgagcgtgaatgccgtcagcgcggcatgagctatggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtccaccaaggccatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccggcaacggcacc
ttcatcgtcaacggcaccgagcgcgtgatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcatcccgtaccgcggttcctggctggacttcgaattcgacccgaaggacgcgctgttc
acccgtatcgaccgtcgccgcaagctgccggtatcgatcctgttgcgcgcgcttggctac
agcaacgaagagatgttggccgagttcttcgagatcaacaccttccacatcaacccggac
gaaggcgtgcagctggagctggtgccggagcgtctgcgtggtgaaacgctgaacttcgac
ctggccgatggcgacaaggtcatcgtggaagcgggcaagcgcatcaccgcgcgtcacgtc
aagcagctggaagccgccggcgttgccgcgctggccgtgccggacgactacctggttggc
cgcatcctgtcgcacgacgtggtggatggctcgaccggcgaactgctggccaatgccaac
gacgaaatcagcgaagaccagctggcggcgttccgcaaggccggcgtcgacgcggtcggc
accctgtgggtgaacgacctggaccgtggtccgtacctgtccaacaccttgcgcatcgat
ccgaccaagacgcagctggaagcgttggtcgaaatctaccgcatgatgcgcccgggcgag
ccgccgaccaaggaagccgcgcaaaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgccgcgtcggccgcaaggacgtg
ctgggcgagtcggtgctgtacgacaagaagtactttgccgagcgcaacgacgaagaatcc
aagcgcctggtcgccgagcacaccgacacctccgacatcctggaagtcatcaaggtgctc
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctcggcaaccgtcgc
gtgcgttcggttggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcggttgtcgatggccgaatccgaaggcctgaccccgcaggaactg
atcaacgccaagccggtggctgccgcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgca
ctgggtccgggcggcctgacccgcgaacgcgcaggctttgaagtgcgcgacgtgcatccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggtctcatc
aactcgctggccgtgttcgcccgcaccaaccagtacggcttcctcgagacgccgtaccgc
aaggtgctggacggcaaggtgtccgacgacgtcgaatacctgtcggcgatcgaagaaaac
gagtacgtgatcgcccaggcgaacgcgctgaccgacgccaagaacatgctcaccgagcag
ttcgtgccgtgccgtttccagggcgagtcgctgttgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcggtcgcagcggcgctggtgccgttcctggaa
cacgatgacgccaaccgcgccttgatgggcgccaacatgcagcgccaggccgtgccaacg
ctgcgttcgcaaaagcccttggtcggtaccggcatcgagcgtgccgttgcgcgcgactcg
ggcgtgaccgtgaatgccttgcgtggtggcgtgatcgagcagatcgacgcggcccgcatc
gtggtcaaggtcaacgaggcagaaattggcggcggcaccgatgccggcgtggatatctac
aacctcatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtc
aatgtgggtgacgtgattgcgcgcggcgacgtgctggccgacggcccgtccaccgacatc
ggtgaactggcgctgggccagaatatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaagatcgttacaccacgatc
cacatcgaagaactgacctgcgtggcgcgcgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtgtccgagcaggccttgaaccgtctggacgagtccggcgtggtg
tacatcggtgccgaagtgcgcgccggcgacatcatggtgggcaaggtcacgccgaagggc
gaaagccagctgaccccggaagaaaagctgctgcgagcgatcttcggtgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgatggcatcgagaaggacaagcgtgcgcgccagatcgaagaatcc
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcacgtctgcgctcgcagatcgtgggtaaggtcgccaacggcggtccgaacctgaag
aagggcgacaacgtcaccgacgcgtatctggacgggctgaagaagtccgattggttccag
ttgcgcatgaaggacgaagacgccgccgatgccatcgaacgcgcacagaagcagatccag
gcgcacgagaaggaattcgaggcacgcttcgccgacaagcgcggcaagatcacccagggc
gacgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgtcgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtacctgtcgaggacatgccgtacatggccaccggcgagccggtggacatcgtgctgaac
ccgctcggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcatctgggttgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaggcggcggtcagc
gagctgcgcaagttcctggacgacatctacaaccacgacaacgcgatcaatgcacagcgc
gtggatctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgac
ggcgtgccgatggcgaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggaactggccgaactgccgcagagcggccagacccagctgtacgacggtcgcaccggc
gaggcgtttgatcgcaagaccacggtcggctacatgcattacctgaagttgaaccacttg
gtcgacgacaagatgcatgcgcgctcgactggcccgtactcgctcgtgacccagcagccg
ctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagagtga
DBGET
integrated database retrieval system
