Xenorhabdus sp. TH1: WDV74_01270
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Entry
WDV74_01270 CDS
T11385
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xet Xenorhabdus sp. TH1
Pathway
xet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WDV74_01270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xet03021
]
WDV74_01270 (rpoB)
03400 DNA repair and recombination proteins [BR:
xet03400
]
WDV74_01270 (rpoB)
Enzymes [BR:
xet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WDV74_01270 (rpoB)
Transcription machinery [BR:
xet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WDV74_01270 (rpoB)
DNA repair and recombination proteins [BR:
xet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WDV74_01270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WXG10416
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Position
282545..286573
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRAMDYSSEDILNLFFKKTVFEIRDNKLQMI
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKEQVDRIEVPVEYIAGKVVAKD
YIDQNTGEIICAANMELSLDLLARLSQAGYKSIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLDREEVEGSGIL
SKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNYVIAQANTVLDEEGHFVEELVTCRHYDESSLFNRDQVQYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGVVQYVDASRIVIKVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQTPCVSLGELVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKDL
TEELQIFEAGLFARIHSVLVAGGVEAEKLSKLPRARWLELGLADEEKQNQLEQLAEQYDE
LKVEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYDLGDDTRQKVDLSTFTDEEVMRLAENLRKGMPIATPVFDGAKETEIKELLK
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggatgttccataccttctttctatccaacttgactcgttccagaagtttatcgag
caagatcctgaaggccaaaatggactggaagcggccttccgttcagtgtttccaattcag
agctacagcggcaattcagagctgcaatatgtaagctatcgtcttggcgaacctgtcttt
gatgtcaaagagtgtcagatccgtggcgtgactttctccgcacctctgcgtgttaagttg
cgtctggtgatctatgagcgcgaagcgccagaaggtacagttaaggacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgataacgggactttcgttatcaacggt
actgagcgcgttatcgtatctcagttgcatcgtagcccaggcgttttctttgacagcgat
aagggtaaaacccattcatccggtaaggtactgtataatgcacgtatcattccttaccgc
ggttcgtggttagatttcgaatttgatccaaaagataacctgtttgtgcgtatcgaccgc
cgccgtaagttgccggcttcgattattctgcgtgcgatggattattcttctgaagacatc
ctgaatctgttcttcaaaaaaaccgttttcgaaattcgcgacaataaattgcagatgatc
ctgattccagaacgtctgcgtggcgagacagcttcatttgatatcgaagcaaacggcaag
gtttatgttgaaaaaggccgccgtatcactgctcgtcatatccgccagttagaaaaagag
caggtagaccgtattgaggtgcctgttgaatacatcgcgggtaaagttgtagcaaaagat
tacatcgaccagaacacaggtgaaatcatctgtgcggctaacatggaactctctttggat
ctgctggcgcgtttaagccaggctggttacaaatctatcgagaccctgttcaccaatgat
ctggaccacggtgcttatatttccgaaactctgcgtgttgacccaaccaatgatcgcctg
agcgcattggttgaaatctatcgcatgatgcgtccgggtgagccaccaacacgtgaagcc
gcagaaaacctgtttgagaacttgttcttctctgaagatcgttatgatctgtctgcggtt
ggtcgtatgaagttcaaccgttcactggatcgtgaagaggttgaaggttccggtatcctg
agcaaagaagacatcattgacgtgatgaagaagctcatcgatatccgtaacggtaaaggt
gaagtcgacgatatcgaccacttgggcaaccgtcgtatccgttccgttggtgaaatggct
gaaaaccagttccgtgttggcctggttcgtgtagaacgtgcagtgaaagagcgtttgtct
ctgggcgatctggataccctgatgccacaggacatgatcaacgccaaaccaatttctgcg
gcggtgaaagagttctttggttcgagccagttatctcagttcatggatcagaacaaccca
ctgtctgaaatcacccataaacgccgtatttctgcgttaggtccaggtggtctgacccgt
gagcgtgcaggctttgaagttcgagacgtacacccaactcactacggccgtgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtttgattaactcattgtccgtttatgcgcgt
accaatgagtatggtttcctggaaaccccttaccgcttagttcgtgacggcgtggtgact
gatgaaatccactacctgtctgcaatcgaagaaggtaactacgttattgctcaggcgaac
accgtattggatgaagaaggccattttgttgaagaattggttacttgccgtcattacgat
gaatccagcttgttcaaccgtgatcaggttcagtacatggacgtttcgacacaacagatc
gtgtccgtcggtgcttctctgatcccattccttgaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccaactctgcgcgctgataagccgctggtc
ggaacaggtatggagcgtgcggtagcggttgactccggtgtaacctctgtggctaaacgc
ggcggtgtggttcagtacgttgacgcatctcgtatcgttatcaaggttaacgaagatgaa
atgtacgcaggtgaagcgggcattgatatctataacctgaccaagtatacccgttcaaac
caaaacacctgtatcaaccagacaccatgtgtttctttgggtgaactggtagaacgcggt
gacgtgctggctgatggtccatccactgacttgggtgaactggctctgggccagaacatg
cgtgtggcgttcatgccttggaatggttataacttcgaggactccatcctcgtctctgag
cgtgttgttcaggaagaccgtttcaccactattcacattcaagaactggcttgtgtgtct
cgtgacactaaactggggcctgaagagattacggctgacatccctaacgtgggtgaagct
gcgctgtctaaactggacgaatccggtatcgtttatatcggtgcggaagtgaaaggtggc
gacattctggttggtaaagtgacaccgaaaggtgaaactcagctgactccagaagaaaaa
ctgttgcgtgcgatcttcggtgagaaagcgtctgatgtgaaagattcctcactgcgtgta
ccaaacggtgtttctggtactgttatcgacgtacaagtctttacccgtgatggtgtagaa
aaagacaagcgtgcgttggaaatcgaagagatgcagttgcgtgaggctaagaaagacctg
accgaagaactgcaaattttcgaagctggcttgtttgcgcgtatccactctgtattggtt
gccggtggtgttgaagcggaaaaactcagcaaacttcctcgtgcgcgttggttggagctg
ggtctggctgatgaagaaaaacaaaatcagttggagcagttggcagaacagtatgacgaa
ctgaaagtagagttcgagaaaaaactggatgctaaacgccgtaagatcactcagggtgac
gatctggcaccaggtgtgctgaaaattgtcaaagtgtacctggcggtgaaacgtcagatc
cagcctggtgacaagatggcaggtcgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagacatgccttacgatgaaaacggcacaccagtggacatcgtcctgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaactcacttaggtatggcg
gcgaaaggcattggtgacaagatcaatgcaatgctgaaacagcaacaagaagttgccaag
ctgcgtgaatttatccagaaagcgtatgatctgggtgatgatacccgtcagaaagttgac
ttgagtaccttcaccgatgaagaagtgatgcgtctggcagaaaacttgagaaaaggtatg
ccgatcgcaacacctgtctttgacggtgcaaaagagaccgaaatcaaagagttgttgaaa
ctgggtggcttgccgacttccggtcagatcacgctgttcgacggccgtacaggtgaacaa
ttcgagcgtcaggtaaccgttggttacatgtacatgctgaaattgaaccacttggttgat
gacaagatgcacgcccgttctaccggctcttacagcctggtgactcagcaaccgctgggt
ggtaaggcacagttcggtggacagcgtttcggtgagatggaagtgtgggcattggaagca
tacggtgcggcgtacaccctgcaagaaatgctcaccgttaaatccgacgatgttaacggt
cgaaccaagatgtataaaaacatcgtggatggtaaccaccagatggaacctggcatgccg
gaatctttcaatgtattgctgaaagaaatccgttcgttgggtatcaacatcgagctggaa
gacgaataa
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