Xanthomonas euroxanthea: XSP_002795
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Entry
XSP_002795 CDS
T07902
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xeu
Xanthomonas euroxanthea
Pathway
xeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XSP_002795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xeu03400
]
XSP_002795 (mfd)
Enzymes [BR:
xeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XSP_002795 (mfd)
DNA repair and recombination proteins [BR:
xeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XSP_002795 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAD1793899
UniProt:
A0A8E4ERQ9
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All DBs
Position
1:3309318..3312788
Genome browser
AA seq
1156 aa
AA seq
DB search
MPSPTTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIE
ADLHALLGEHATLPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPALTRGVVIVPVQT
LMQQLAPLSYIVGGSFDLKVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVF
PMGEATPLRIELLDEDIDSIRAFDPESQRSLDKVEAVKLLPGREVPMDDASVERVLACLR
ERFDVDTRRSALYQDLKSGLAPSGVEYYLPMFFSKTATLFDYLDKRVLPLVATGVSNAAD
TFWAQAQDRYEQRRHDVERPLLTPDELYQSPDALRERLNKLARIEVWASDHPRIDEAAAL
GDQPLPPLPVAAKDAPAGQALSSFLGHYPGRVLVAADTAGRREALMEVLAAAQLKPEVVA
DLPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRSRRVGREPEAI
IRDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLIS
RYSGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMY
EPFAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGK
QVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGEIDVIIGT
HRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGL
RDLSIIATPPPNRLAVQTFITAWDNALLREAFQRELSRGGQLYFLHNDVESIVRMQRELS
ELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADR
FGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAAKRLEAIASMDELGAGFTLATHDL
EIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVA
SLIPEDYLPDVHTRLTLYKRISSARDADALRELQVEMIDRFGLLPDPVKHLFAIAELKLQ
ANALGVRKLDLGENGGRLVFEAKPAIDPVAVIQMIQKQPKIYTMDGPDKLRIKLPLPEGA
DRFNAARGLLTMLAPR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccaaccaccttcccctctccgccgctgcccaagtccggccagctccgcgcc
tattggcgcgctccgtcttcgccgactgcgctggcctggtcgatcgcaagggctgccgag
gcgcatgccggcccgctgctggtgatcgcacgcgacaaccagagcgcgcatcagatcgag
gcggatctgcacgccttgctcggcgagcacgccacgttgccggtggtgccgtttcccgat
tgggagaccctgccctacgaccagttcagcccgcacccggaaatcatcagccagcgcctg
gcggcgctgcatcggctgcccgcgctgacccgtggggtggtgatcgtgccggtgcagacg
ctgatgcagcagctggcaccgctgagctatatcgtcggcggcagtttcgatctgaaggtc
ggccagcggctggatctggatgcggaaaaacgccggctggaaagcgccggttaccgtaac
gtgccgcaggtgatggacccgggcgatttcgcggtgcgcggcggcctgctcgacgtgttt
ccgatgggcgaagccacgccgttgcggatcgagttgctggacgaggatatcgactccatc
cgtgccttcgacccggaatcgcagcgctcgctggacaaggtcgaggccgtcaagctgctg
cccggccgcgaagtgccgatggacgatgccagcgtggagcgcgtgctggcctgcctgcgc
gagcgtttcgacgtggacacccggcgcagcgcgctgtaccaggacctgaaatcgggtctg
gcgccgtcgggcgtcgagtactacctgccgatgttcttcagcaagaccgccaccttgttc
gattatctggacaagcgcgtgttgccgctggtcgccaccggtgtctccaatgcggccgat
acgttctgggcgcaggcacaggaccgctacgaacagcgccgccacgacgtggaacgcccg
ctgctgacgccggacgagctgtatcaatcgccggacgccttgcgcgagcggctcaacaag
ctggcgcgcatcgaagtctgggccagcgatcatccgcgcatcgacgaggccgccgccctg
ggcgaccagccgttgccgccgctgccggtggcggcaaaggacgcgccggccggccaggcg
ctgtcctcgttcctgggccattaccccggccgcgtgctggtggccgccgataccgccggc
cgtcgtgaggccttgatggaagtgctggccgccgcgcagctgaagccggaggtcgttgcc
gacctgcccgccttcctggctgccaccaagctgcgcttcggtatcaccgtggcgccgctg
gaagacggctttgcgctggacaccccgcagattgcggtcctgaccgagcgccagctgttt
cccgagcgcgccaaccaaccgcggcgcagccgccgggtagggcgcgagccggaagcgatc
atccgcgacctgggcgagctgtccgaaggcgcgccgatcgtgcacgaagaccacggtgtg
ggccgctaccgcgggctgatcgtgctcgatgccggtggcatgcccggcgagttcctggag
atcgaatacgccaagggcgaccgcctgtacgtgccggtggcgcagctgcatctgatcagc
cgctattccggcgcctcggccgagaccgcgccgctgcattcgctgggcggcgagcagtgg
accaaggccaagcgcaaggcggccgaaaaggtccgcgacgtggcggccgaattgctggag
atccaggcgcgccggcgtgcccgcgccgggctggccttgcaggtggaccgggcgatgtac
gagccgttcgcggccggctttccgttcgaggaaaccggcgaccagctggccgccatcgat
gcgaccctgcgcgacctgggtagcagccagccgatggaccgcgtggtctgcggcgatgtc
ggcttcggcaagaccgaggtcgcggtgcgcgccgcctttgccgccgccagcgccggcaag
caggttgccgtgctggtgccgacaacgctgctggccgagcagcattaccgcaatttccgc
gaccgcttcgccgactacccgatgaaggtggaagtgctgtcgcgcttcaagagcaccaag
gaaatcaaggccgagctggagaaggtggccagcggcgagatcgacgtgatcatcggcacg
caccggctgctgcagccggacgtcaagttcaaggacctgggcctggtcgtggtcgacgaa
gagcaacgcttcggcgtgcggcagaaggaagcactcaaggcgatgcgcgccaacgtgcat
ctgctcacgctcaccgcaacccccatcccgcgcacgctcaacatggccatggccgggctg
cgcgacctgtcgatcatcgccaccccgccgccgaaccggctggcggtgcagaccttcatc
actgcctgggacaacgcgctgctgcgcgaggccttccagcgcgagctcagtcgcggcggg
cagctgtacttcctgcacaacgatgtggaaagcatcgtgcgcatgcagcgcgagctgtcc
gaactggtgccggaagcgcgcatcggcatcgcccacgggcagatgcccgagcgcgagctg
gagcgggtgatgctggatttccagaagcagcgcttcaacgtgttgctgtcgaccacgatc
atcgagtcgggcatcgacattcccaacgccaacaccatcatcatcaaccgcgccgaccgc
ttcggcctggcccagctgcaccagctgcgcggccgcgtcggccgctcgcatcaccgcgcc
tacgcgtatctggtggtgccggatcggcgctcgatgacctccgatgcggccaaacgcctg
gaagcgatcgcctccatggacgagctcggcgccggcttcaccctggccacgcacgatctg
gaaatccgcggcgccggcgagctgctgggcgaagaccagagcggacagatggccgaggtc
ggtttcagcctgtacaccgagctgctggaacgcgcggtacgcagcatccgccagggcaag
ctgccggatctggatgccggcgaggaagtccgcggtgccgaggtcgagctgcatgtggcc
tcgctgattcccgaggattacctgccggacgtgcatacgcggctgacgctgtacaagcgc
atctccagcgcacgcgatgccgatgcattgcgcgaattgcaggtggagatgatcgaccgc
ttcggcctgctgccggacccggtcaagcacctgttcgccattgccgaactcaagctgcag
gccaatgcgctgggcgtgcgcaagctggacctgggcgagaacggcggccggctggtcttc
gaggcaaaaccggcgatcgacccggtggcggtgatccagatgatccagaagcagccgaag
atctacacgatggacggcccggacaagctgcgcatcaagctgccgctgccggaaggcgcg
gaccgcttcaacgccgcgcgcggcctgctgacgatgctggcgccaagatga
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