Xylella fastidiosa Temecula1: PD_1217
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Entry
PD_1217 CDS
T00113
Symbol
dnaQ
Name
(GenBank) DNA polymerase III epsilon chain
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03030
DNA replication
xft03430
Mismatch repair
xft03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD_1217 (dnaQ)
03430 Mismatch repair
PD_1217 (dnaQ)
03440 Homologous recombination
PD_1217 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_1217 (dnaQ)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_1217 (dnaQ)
Enzymes [BR:
xft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PD_1217 (dnaQ)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PD_1217 (dnaQ)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PD_1217 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AAO29067
UniProt:
Q87C77
LinkDB
All DBs
Position
complement(1418214..1418933)
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AA seq
239 aa
AA seq
DB search
MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESGAQEV
TGLTMEFLADKPEFSMIADKFLAYINGAELIIHNAAFDLGFLDYELSRLGSQYGKITDRA
SVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEI
GFALPESSRGGVDAASVAFMPDVLLTRPCVVASQSELEAHEARLAKLRKIAGHVLWDAI
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgaggaataagaagcgtcagattgttcttgatactgagaccactggcctggaatggagc
aaggggaaccgcattgtggagatcggtgcggtcgaactgcttgatcgccgactcagtggg
gacaaatttcatcgttatctcaagcctgatgtgtcgtttgagtccggtgcccaggaggta
acggggctgacgatggagtttctagcggacaagccagagttcagcatgattgccgataag
tttttggcttatatcaatggtgccgaactgattattcataatgcggcgttcgatctggga
ttccttgattacgagttatcgcggttgggttcgcagtacgggaaaatcacagatcgtgcc
agcgtgcttgacactttggtgatggctcgggagcgttatccgggtcagcgtaattcactg
gatgcattatgtaagcgtcttggtgtggataacgcccaccgtcagttacatggtgcatta
cttgacgcgcagatattggccgatgtttatatcgcgttgacctctggacaagaggaaatt
ggttttgcattgcctgagagcagccgtggtggtgtcgatgccgctagcgtggcatttatg
ccggatgtgttgttaacacgtccatgtgtggtggcgtcgcaatccgaactggaggcgcat
gaggcgcgtttggccaagttgcgtaagatcgctggtcatgtgctgtgggatgcgatatag
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