Xanthomonas hortorum pv. gardneri: BI317_11055
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Entry
BI317_11055 CDS
T04668
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga00040
Pentose and glucuronate interconversions
xga01100
Metabolic pathways
xga02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BI317_11055
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BI317_11055
Enzymes [BR:
xga01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
BI317_11055
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GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
APP84624
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Position
2393003..2394064
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AA seq
353 aa
AA seq
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MIIKTLNGALALALSACAASAIAGQVGYGAATTGGGNKTPVNVATFEAMQAAIDSYSGSG
GLVLNYTGKSDFSTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSAANFGVWVVGNANNI
IIQNMTIGLLQGGEAADSISLEGNSSGSPSKIWVDHNTVFASLTKCSGAGDASFDGGIDM
KKGVHHVTVSYNHVYNYQKVALNGFSDSDTKNSAARTTYHHNRFENVESRVPLQRRGLSH
IYNNYFNNVTTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
GTPDGSKPYANATNWITTKVFPEPLGYTYSITPAAQVKAKVIATAGAGKNLAE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcaagacactcaatggcgcgctcgcgcttgcactgtccgcttgcgccgcgagt
gccatcgccggccaggtcgggtacggtgccgctaccaccggcggcggcaacaagaccccg
gtcaacgtcgccaccttcgaagcgatgcaggccgccattgacagctattccggcagtggc
gggctggtgctcaattacaccggcaagtccgacttcagcaccatcaaggacgtctgcgcg
cagtggaagctgccggccaagaccgtgcagatcaagaacaagagcgatgtcaccatcaag
ggcgcgaatggctcggcggccaacttcggtgtgtgggtggtgggcaacgccaacaacatc
atcatccagaacatgaccatcggcttgctgcaaggcggcgaagctgcggattcgatttcg
ttggaaggcaattccagcggctcgccgtccaaaatctgggtcgatcacaacaccgtgttc
gcctcgttgaccaagtgctccggtgccggcgatgcctccttcgatggcggcatcgacatg
aagaagggcgtgcaccacgtcaccgtgtcctacaaccacgtctacaactatcaaaaggtc
gcgctcaatggattcagcgacagcgacaccaagaactcggccgcgcgcaccacctatcac
cacaaccgcttcgagaatgtcgagtcgcgcgtgccgctgcagcggcgcgggctgagccat
atctacaacaactacttcaacaacgtcaccacctccggcatcaacgtgcgcatgggcggc
gtggcgaagatcgaatccaactacttcgagaacatcaagaacccggtgacctcgcgcgac
agcagcgagatcggctactgggacctgatcaacaactacgttggcagcggcatcacctgg
ggcacgcctgatggcagcaagccctacgccaacgccaccaactggatcaccaccaaggtg
ttcccggagccgctgggctacacctacagcatcaccccggccgcgcaggtcaaggccaag
gtgatcgctactgcgggtgccggcaagaacctggcggagtga
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