Xanthomonas hortorum pv. gardneri: BI317_11315
Help
Entry
BI317_11315 CDS
T04668
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga00040
Pentose and glucuronate interconversions
xga01100
Metabolic pathways
xga02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BI317_11315
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BI317_11315
Enzymes [BR:
xga01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
BI317_11315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
APP84667
LinkDB
All DBs
Position
complement(2440436..2441569)
Genome browser
AA seq
377 aa
AA seq
DB search
MHFSIISLFLAFFIAQVGIAKAGTGGFSSASVSGETAITVTTLAELQAAFNAKNHHIIIR
GKIYGGPKLTTLNFSSTAWNNITIEGAAGGGAALQNIQLKFSGEKLPAGTNIQNVVIRNI
SFSGNVGDLQALPDQVEGTSNNIGINYVGVSLRRISNAWIDHCDFYDMSDDLLSVGRSSD
YITLSYNHFYFSNSWVNMNPDPVWNWVDKNYHDLANERLAILVGHNRNDSYVYGGNKLHV
TMHHNWFGPNLAGRPLLRGWVHAYNNYFDNSTLPNGMRTAADGRRYEKQQYNALQVGSGS
IVFSESNYFYKTNNSNQIRLESSGDMYNFYEKKNVYDAATGNSAIGSTFNNAPVKYSYKS
DDAARVPSIVLSTAGPH
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgcatttctctattatctcgctgtttcttgctttttttatcgcacaggttggtatcgcc
aaggctggaaccggtggattttcttcagcgtctgtatctggcgagactgcgattacagtg
acaacgcttgcagagctgcaagcggcattcaatgccaaaaaccatcatatcatcatccgt
ggaaagatctacggcggcccaaaattgaccaccctgaatttctccagcacagcttggaac
aacataacaatcgagggtgctgcaggcggtggcgcggctttgcagaatatccaattgaaa
tttagcggcgagaagctgcccgccgggacaaacattcaaaacgtggttatcagaaacatc
tcattctctggcaatgtcggcgacttgcaagccttgcctgaccaagtcgaaggaacttcc
aacaacattggcatcaactacgtgggcgtatcattgcggcgtatatccaatgcttggatc
gaccactgcgatttctacgacatgagcgatgatcttttatcagtcggcaggtcatctgat
tacatcacgctgtcgtacaatcacttctacttcagcaacagctgggtcaacatgaatccg
gatccggtatggaactgggtcgataaaaattatcatgacctcgcaaatgagcgcttggca
atccttgttggtcacaacaggaatgactcatatgtatatggtggcaataagctgcacgtg
acgatgcaccacaactggtttggccccaatcttgccgggcgccccctactccgcggttgg
gtccatgcctacaataactactttgacaatagcaccttgcccaatggtatgcgcaccgct
gccgatggtcgccgctatgaaaagcagcagtacaacgctttgcaggtaggtagcggcagc
attgttttttccgaatcaaactatttttacaaaaccaataatagcaaccagattcgactg
gaatcaagcggggacatgtacaatttctacgagaaaaaaaacgtgtatgacgcagcaacc
ggcaattcggcgatcggctcaaccttcaataatgcgccggtgaaatacagctacaagtct
gatgatgcggcaagagtccccagcatcgttctatccaccgcggggccgcactaa
DBGET
integrated database retrieval system
