Xiphias gladius (swordfish): 120793214
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Entry
120793214 CDS
T07311
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120793214 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120793214 (cnot1)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120793214 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120793214 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120793214
NCBI-ProteinID:
XP_039988998
LinkDB
All DBs
Position
LG8:7773849..7801178
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNVDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQSHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMGSL
NLGGTAASHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGSGIGSSLGMPAVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQV
QAQAQSQQPGGPKAPQPGQPSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQ
NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKSLEEQ
LSAPKKEAKPPEEMLPVSTTGDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYAL
AGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKD
FALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREM
MEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLT
YQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATD
DVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAV
EGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVE
AVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFH
TIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPP
GLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMC
VEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKV
LGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHIL
RPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNK
PMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPF
TPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGAVP
TYLVIDTGCINILQLITMQSWDLFFFFLFVSQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttttgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacaccattgacaatcccctacac
taccagaagagtttgaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaagtccaagaggtgatatttggccttgctttgctcaactccagcaacgtagac
ctacgcggctttgctgcgcagttcatcaagcagaaactcccggacctcctgcggtcttac
gttgacgctgacctcggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctactgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggaacgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatctta
ccagactcgggggagttagcaaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtgtggacgagtgccgaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtagccagggtcctgggcatgatggctcgtacc
cactctggcctaactgatggcatcccactacagtccatctctgctccaggaagtggtatc
tggagtgacggtaaggataagaacgatggctcgcagtcacacacatggaatgttgaggtt
cttattgatgtcgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctggaccacccaggctttataatccgggacagtaaaggcctgcaaatagtggtgtatggc
attcagagggggttgggcatggaggtctttccagtcgatctcatctatcggccatggaaa
cacgccgagggacagctgtcattcattcagcactccctgatgagcccagaagtgttttgt
tttgctgactacccttgccacaatgtggccactgacatccttaaggctccaccagaggat
gataaccgggagattgccacatggaaaagtctggacctggtggagagcctgcttaggctg
tctgaggtgggccagtatgagcaggtgaaacagctgtttagcttcccgatcaagcactgc
ccagacatgctggtgttggcattactgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttctgggcaaccaccccaactctgccattatc
ctgcattacgcctggcatggacagggacagtctccctccatccgtcagctaataatgcat
tctatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaagcgtgtgtgacgttcctg
aagaggcgctgcccgtctattatggggggtctggccccagacaaggaccagcccaaaagt
gcccagctgccgccagagaccttagccaccatgctagcctgcctgcagtcctgtgctggg
aatgtttcccaggagttgtctgagacaatactgaccatggttgccaactgcagcaatgta
atgaataaagcccggcagccgccaccaggggtaatgccgaagggacgtgcccccagcacc
agcagcctggatgccatctcacctgtacagatggaccctttgtctggcatgggttccttg
aacttggggggcacagccgcctcccacactcagagcatgcagggtttcccaacctcactg
agttcagcttttagtaatccccagtccccagcaaaggccttcccaccactctccaacccc
aaccccagcacaccatttggaggcattggcagcctgtcctcgcagctccctggtatggac
tctggtcccttgggctcaggcatcggctctggtattggctccagtctggggatgccagca
gtaagcaccgacccttttggcaccaggaagatgagcacaccaggcctgaatccacctacc
tttcagcagactgatctgtcccaggtgtggccagaggcaaaccagcactttagtaaagag
atagacgatgaagcaaacagttacttccagcgcatctacaaccacccacctcacccaact
atgtctgtggatgaagtactagagatgctgcagaggttcaaggattcaaccatcaagcgg
gaacgagaggtgttcaattgcatgcttcggaacttgtttgaggaataccggttcttcccc
cagtacccagacaaggagctgcacatcactgcctgcctttttggtggaattatcgagaag
ggtcttgtcacatacatggccctgggcttggctctccgatatgtccttgaagccttaaga
aaaccctacggatccaaaatgtattactttggaattgctgccctagataggttcaaaaac
agactaaaggactatcctcagtattgtcaacaccttgcttcaattgcccacttcttgcag
tttccccaccatttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgggac
cctccggtgaagatgcaaggctccatcaccacacctggcagtctggcactggcacaagtt
caagcccaggcccagtcgcagcaacctggtggccccaaagccccacagccaggtcaacca
agcaccctcgtcaccaccaccacgactacaaccacagcagccaagaccaccaccattaca
agaccaacacccagcagcttcaagaaagatgtgcctccctccataaacactaccaacatt
gacaccctgctggtggccactgaccaaacagaaaggattgtagagcctccagagaatgtc
caggagaagattgcttttatcttcaacaacctttctcagtccaacatgacacagaaggtt
gaggagttgaaagagacagtgaaagaggagtttatgccctgggtgtctcagtacctggtg
atgaagcgtgtcagcattgagcccaacttccacagtctgtactccaactttctggacact
ctcaagaaccctgagtttgtcaagatggtcctcaatgagacttacaggaatataaaggtg
ctcttgacctctgacaaggcagctgccaatttctctgatcgctccctgctgaagaatctg
ggccactggttgggcatgattacactggccaaaaacaagcctattctctatacagatttg
gaagtcaagtctctgctactggaagcctatgtgaaaggccagcaggagctactttatgtg
gttccctttgtggccaaagttttggagtccagtctacggagcatggttttcaggccccag
aacccctggaccatggccatcatgaatgtccttgctgagcttcatcaggaacatgacctt
aagctgaacttaaagtttgagattgaggttctgtgtaagaacttgtccctggacatcaac
gagctgaaaccaggaaacctgctgaaggacaaggagaagctaaagagcctggaggagcag
ctgtctgcaccaaagaaagaggcaaagcccccagaggagatgctaccagtttctaccaca
ggagactttgttccatttgcagctcctccctcaaccccagctgccaccaccaccacttgc
acaaccaccgggccccccaccccacagttcagttaccacgacatcaatgtgtatgccttg
gcaggcctggctccacacatcaatataaatgtcaatatccctctgctacaggcccatcct
cagttgaagcagtgtgtacggcaatcagttgagcgagctgtccaggagttagtgcatccc
gtggtcgatcgctctatcaaaatcgccatgacaacctgtgagcagatcatcaggaaagac
tttgccctggattcggaggagtcccgcatgcgggtcgctgcccaccatatgatgagaaac
ctgaccgctggcatggcaatgatcacatgtcgtgagcccctgctcatgagtatagctacc
aaccttaagaacagctttgctgctgcacttagggcaccaaccccccagcagagggaaatg
atggaagaggctgcagcccggattgctcaagacaattgtgaattggcttgctgcttcatt
cagaaaacagctgtggagaaggctggccctgaaatggacaagagactagccacggagttt
gagctgagaaagcacgcacgccaagagggacggcgttactgtgatcccgttgttctgact
tatcaagctgaacgtatgcctgagcagatcagactcaaggtgggaggagtggaccctaag
caactggctgtatatgaggagtttgccaggaacgttccaggtttcttacccagtaatgac
ctctcacaacccactggcttcttggctcagcccatgaagcaacaggcatgggccacagat
gatgtggctcagatctatgataagtgcatggcagacttggagcaacatcttcatgctata
cctcctgcccttgccatgaacccccttacccaggccttgcgcagcctgctggaggccgtg
gctttggctaggaactccagggatggcattgccgcacttggcctactgcagaaggctgtg
gaaggtcttctagatgctactagcggggctgatgctgacttgctgctccgctacagggaa
tgccacctgctggtgcttaaagcccttcaggatggacgtgcctatggaccacagtggtgc
aataagcagatcaccaggtgtctgattgaatgccgcgatgagtacaaatacaacgtagag
gcagtggagcttctgatcaggaaccatctcgtgaatatgcagcagtatgacttgcacctg
gcacagtcaatggaaaatggattgcactacatggcagttgcatttgccatgcagttggtg
aagctgctgttggtggatgaacgcagtgtcagccatgtcacagaggccgacctctttcac
acaattgagactttaatgagaacctgtgcacactccagagccaacgcacctgagggtctt
ccccagcttatggatgttgttcgctcaaactatgaagccatgattgaccgggcccatggt
ggacccaactttatgatgcactcggggatttcacaggcttcagaatatgacgatccccca
ggcctgagggagaaagcagagtacctcttgagggaatgggtgaacctgtatcactcagcc
gctgctggcagggatagcaccaaagccttctctgcctttgttggccagatgcaccaacag
ggcatcttgaagacagatgacctgatcacgagattcttccgactgtgcacagaaatgtgt
gtggagataagctatcgtgcgcaggctgagcagcagcacaacccggcagccagtgcagcc
atcatcagagccaagtgttaccacaacctggatgcctttgttcgactcatagcactgctg
gtcaaacactctggagaggccaccaacacagtgacaaaaatcaacctcctcaacaaggtg
ctgggtatcgtagttggggtgttgatccaggaccatgatgtccgtcagacagaattccaa
cagctcccataccaccgcattttcatcatgttgctgttggagctcaatgcccctgagcat
gtccttgagaccatcaacttccagacactcaccgccttctgcaataccttccacatcctg
agaccaaccaaagcccccggctttgtgtacgcctggctggagctcatctcccatcgcatc
ttcatcgctaggatgctagcgcacacaccgcagcagaagggttggcccatgtatgcacag
ctgctgattgatctcttcaagtacctggcccctttcctgaggaatgtagagctcaacaaa
cctatgcaaatcctctacaagggcacactgcgagtgctcctggtcctgctgcatgacttt
ccagagttcctgtgtgactaccattacggtttctgtgacgttattccacccaactgcatc
cagctccgcaacctcatcctgagtgcctttccacgcaacatgaggctccctgaccctttc
acacccaatctcaaggtggatatgctgagtgagatcaacattgctccccgaatcctcacc
aacttcacaggcgttatgccttcccagttcaagaaggatctggactcgtatctgaagacc
cgatcaccagttactttcctgtctgagctgcgcagcaacctgcaggtaggagcagtgccc
acctatttagtcattgacactggttgtattaatatacttcaattaatcacaatgcaatct
tgggatcttttttttttttttctttttgtctcccaggtgtctaatgagccaggaaatcgc
tacaacatccagcttatcaatgccctagtgttgtatgtaggcacacaggctatcgctcac
atccacaacaagggcagcaccccctccatgagcacgatcactcactctgcccacatggac
atcttccagaacctggctgtggacctggacactgagggccgttacctgttcttgaatgcg
atcgccaatcagctgcgctaccccaacagccacactcactacttcagctgcaccatgctc
tatctatttgctgaggccaacaccgaggccatccaggagcagatcaccagggttctgctg
gagaggctgatagtgaacaggcctcacccatggggtctcctcatcaccttcatcgagctg
atcaagaatcctgccttcaagttctggagccacgactttgtgcactgtgccccagagatt
gaaaagctgttccagtcagtagcccagtgctgtatgggacagaagcaggcccagcaggtg
atggaaggcaccggtgccagctag
DBGET
integrated database retrieval system
