Xiphias gladius (swordfish): 120797218
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Entry
120797218 CDS
T07311
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120797218 (focad)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120797218 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
120797218
NCBI-ProteinID:
XP_039996604
LinkDB
All DBs
Position
LG12:2220047..2271260
Genome browser
AA seq
1807 aa
AA seq
DB search
MESLKTRFDFPSPVIQAQTVRNLVAAVLKEKEKNGQIMQSSLQGPALEALWQQCCSDCAL
VRSACCDAMVLLVDQGHADLNYILNSVLNLLPSARNVQGLIKVIGRLLQRQADQRDRETQ
FACPYSIRISPHPYITALENRVDCWPALLLEIDDFIQQAADRNEPAYITMLAPFLQYLYC
EPQRQPQHALLRHSLLRVLLPIHQGAGSVLQKKDQEKPSTVPDSLLHCLCQLVPYMQVDS
VEAVLELCGFMDALLQGLVRASEEPWRTERARLLLHLLCACQRCLKLNGDCRPLLNLLQQ
LLPACQQELPVDELMMGVALLLLEAPAAQQTSLLSLALSLAPEQAELSPWLSPVLVLPVL
QLLSCSGLTEPLTDQRTHRLNQSLAHSLLRSISRQADKPQQPSPPLALALSSWYGELSVA
LSILHKVADNPSPAADWLLSVRSAVSSSQHLPCSLTLIVTYLIITGQEDVCQLALNASQA
FAAADPCQVPSLIPVLLFKLGKEKNPDLAHAVLSCLPNLGTHKLCVPMVLPTLHMLASNP
KLRAVAMRLMTALWKKQDRVYPELQRLLGQQDSTVVVGRDAQWEQVLARAACLRDICRER
PYQHGGDMLAATTHTLSQCTRPDMATPAALALQGLQELCRAEVVDVISTWRRLGPELSCD
SRPLMVKVIAELLALVPQLTVKSEEYEKLKEEVVSFLWNYAVSKDPEVASCGYRALSDFP
EAVHTITHLPEAARPAVNLPEDEEDELGDEKEEEEKDLSIPGSSYVKLMAVTPVSVLPAF
KLFLTSLVKQEMSQMPRGVYFSALRGGNLRSDQGKTVAGIPSFMLKTYEKNKQPGLKPGL
AAGLLLSYELPVQTDRNGKPIDRFLISRSRSYQQTLTALIHEVNIQPSEWHRALLLPQAW
RGFMSRAFHAVLQGQRAYLEMQQKQGKENPEDLQYKQHCAWLWARDQLADVIKAATKDSP
VIQGNSILSLSGLAAVLAKYESNLPADSDGSLGAGPEFVPTASWLAMVLETLLSIVSSSY
KARGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDALVQVLSALQAGLP
GSPTADDSQAVQFHSGLALGMVLSSLQHQRLSDLSAQKDTDLLLSSLDALESCSFNPNLE
YNTGCMLGLGLVLAALCSSGQKDQHIHVTQTLDKLLSNLQDSSGQGRMLQEVLAYSVASV
GVSAFSAGLIDAAKAEEVMNTLRTLTEESQQTPGFSLALGFVVHGLSLSGHGKAEDIHPR
LLAAWIKILLAEGCPTMQRLAAVNGLVALVGSESYLIQLKSELELSSQQQSRLNEVIRAI
TQIITFSGAIGLQSNSACLVGHLHLAHMSTSHSHTAVPQDFSYLSDKSVIRSIIDFISEA
GKKGPEFCHPAVVNTALTPLASVGASFQYPPINWSAVLSPLMRLSFGEDVQHQCVVLAAC
QAQSSQSASLFLGSWLSPPLVHSLSYQTRAHLYETLGLWMKHVAEDKLQVHVESLGLQQF
QEDLRPQRLSLCCALLQGLAQAMALPNPPSNCWTILCSTTEKIFTLLPNQMQDNEVDLYM
GVAKCLSEMSDTEIDRIARVTETQMEKTCFILTYLTSQGRVPLLGLNDIIAGVLRGWSSR
RVGWLLLQTFYQCRLATSSNTGVSNRMEWLLELMGHIRNVVYGATSVTCGDTKLATDFLF
QVFAAAVVSWGDHFMPLLLGIKAQWFPWQPGSKPRALQHSLYGEESLTDRALLQCLLGMS
HSLPLLLDKEPWSSQTQKFIDWLLSITEGPDQCVSTTTIMTAKAALLALKSSAEFKRKAV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagagtttgaagacacgttttgattttcccagccctgtcatacaggcacagacagtc
agaaatcttgttgctgccgtgctaaaggagaaagagaaaaatgggcaaatcatgcagtca
tcccttcagggcccagcattggaggctctgtggcagcagtgctgcagtgactgtgctctg
gtgcgttcagcctgctgtgatgccatggtactgctggtggatcagggccacgcagacctg
aattacatcctcaacagtgtcctcaacctcctgccttctgccagaaacgtccaggggctt
ataaaggtcattggacggctattacagaggcaggcagaccagagagaccgagaaacacag
ttcgcctgcccttactccatcaggatcagccctcacccatacatcacagccctggagaac
cgagtggactgctggccagctctgctgctggagattgatgatttcattcagcaggctgct
gacagaaacgaaccagcctacatcaccatgctggcccccttcctgcagtacctgtactgt
gaacctcagaggcaaccccagcatgccctcctccgacacagtctcctcagggtgctgctg
cccatacatcaaggagctggatcagtcctccagaaaaaggaccaggagaagccctccaca
gtgcccgacagcctgctgcactgcctctgccagctggttccatacatgcaggtggacagc
gtggaggcggtgctggagctgtgtgggttcatggatgctctgcttcagggtcttgttcgg
gcctctgaggagccctggaggactgagagagccaggctgcttctgcatctgctgtgtgcc
tgtcagcgctgcctcaagttaaatggagactgtcggccgctactcaacttactacagcag
ctcctgcctgcctgccaacaggagctgccagtggacgagctgatgatgggtgtggccctg
ctcctgctagaggcccctgcagctcagcagaccagcctgcttagtctagcgctgagtttg
gctccagagcaggctgagctgtcgccctggttgagtccagtcctggttcttcctgtgctg
cagctgctgtcctgttcgggcctaactgagcctttgactgaccagaggacacaccgcctc
aaccaaagcctggcccacagcctgctccgcagcatcagcaggcaggcagataaaccccaa
cagcctagtccaccattggcacttgctctcagttcctggtacggcgagctcagtgtggct
ctgtccatattgcataaagtggcagataatccatcaccggctgctgattggctgctgtca
gttcgctcggccgtgtcgtccagccagcacctgccctgctccctcaccctcattgtgacc
tatctcatcataacgggtcaggaagatgtctgccagctggctttgaatgcaagccaggcc
ttcgctgcagccgacccctgccaggtcccttccctcatccctgttctgttgttcaaactg
gggaaggaaaagaatccagacctggctcatgctgtactcagctgcctgccaaacctcggg
actcataagctctgtgtccccatggtgctgccgactctccacatgctggccagcaacccc
aagctgagagctgtggcaatgcgcctcatgactgctctctggaagaaacaggaccgagtt
tacccagagctgcagcgtctgctgggtcaacaggacagtacggtggtggtggggagggac
gcccagtgggagcaggtcctggctagggctgcctgcctcagggacatctgcagagagagg
ccttaccagcatggaggtgacatgttggctgctactacacacactctgagccagtgcacc
agaccagacatggcaacccctgctgctctagccctgcaaggactacaggagctgtgccgg
gcagaggtagtggacgtcatctcaacatggaggcgtctcgggcctgagctcagctgtgat
tcccgtccactgatggtcaaagttatagctgaacttctggctctggttccccagctcact
gtcaagtcagaggagtatgagaaactaaaagaggaggtggtcagctttctctggaattat
gctgtgagcaaggatccagaggtggccagctgtggctacagggctttgtctgattttcct
gaagcagtccacacaataactcaccttcctgaggcagccaggccagctgtaaacctccct
gaagatgaggaggatgaactgggggatgagaaagaggaagaggagaaggatctctccatc
ccaggttcatcttacgtgaagctgatggctgtcacccctgtatctgttctcccagcattc
aagctcttcttgacatcactggtgaagcaggagatgagccagatgccacggggggtatac
ttctctgccctgagaggggggaacctgcggtcagatcagggtaaaacagtggcaggaatc
ccatcattcatgctgaagacctatgagaaaaacaagcagcctgggctgaagcctggacta
gcagctggactgctgctcagctatgagctgcctgtgcagacggaccgcaatggcaaaccg
attgatcgcttcctcattagccgcagccgcagctaccagcagaccctgacagccctcatt
catgaggtgaacattcagccttctgaatggcacagagccctcctcttaccccaggcctgg
aggggtttcatgagccgagctttccacgctgtcttacagggtcaacgtgcgtacttggag
atgcaacagaaacaaggcaaagagaacccagaggacctgcagtacaaacagcactgtgcc
tggctgtgggccagagatcagctggcagatgtcatcaaagccgctacaaaggacagtcct
gttattcagggaaactccatcctgtctctgagtggcctggctgctgtccttgctaaatat
gagagcaacctgcctgctgatagcgacggcagcctcggggctggaccagagtttgtgccc
acagccagctggttggccatggtgctcgagacccttctcagcatcgtcagcagcagctac
aaggccagaggacaagttttcccatggttcctacatcgttcctactcaggtgagaacaca
gcaagtgccatagctcgctcctgtgccagcctggcattgtccttgctggttccggtgctg
gtggtgtggcagagggacgccctagtccaggtcctgtcagctctgcaggccggcctgcca
ggctcacccaccgctgatgattcccaggctgtccagttccactccggcctcgcgctgggc
atggtgctgtccagtctgcaacaccaacgcctcagtgacctctctgctcagaaggacact
gatctcctcctcagctccctggacgctctggaaagttgctccttcaaccccaacctggaa
tacaatactggctgtatgttaggtctgggtctggtgctggcagctctctgcagtagtgga
cagaaggaccaacacatccatgtcacccaaacactagacaaactactgtccaacctgcag
gacagcagtgggcagggacgcatgctgcaggaggtcttggcgtactctgtggcgtctgtg
ggtgtttcagccttcagtgcaggccttatagatgctgccaaggctgaggaggtcatgaac
actctgcgcaccctgactgaggagagccagcagaccccagggttctccctagctctaggg
tttgtagtccatggcctgtcactgtcaggtcacggtaaagcagaggacatccaccctcga
ctgctggctgcttggatcaagatcttactggctgagggttgtcccactatgcagcgactg
gctgctgtcaacggcctggtggccttagtaggatctgagagttacctcattcagctaaaa
agtgagttggagctttcctcccagcagcagagcagactgaatgaggttattcgagccatc
acacagatcataacattctcaggagccattggtttgcagtccaacagtgcctgtttggtg
ggtcatttgcatttggcccacatgtccaccagtcacagtcatacagcagttcctcaggat
ttcagttacctctcagataaaagcgtcatcagatcaatcattgacttcatctcagaggct
ggaaagaaaggtccagagttctgtcatccagctgtggttaacactgctctgacccccctg
gcatcagttggagccagtttccagtacccccccattaactggagtgctgtcctatctcct
ctgatgaggctcagtttcggagaggatgtacagcatcagtgtgtggtactggcagcgtgt
caagctcagtcttctcagagtgcatctctgtttctgggctcctggctgtcacctcccctt
gtgcacagtctcagttatcagactcgggctcacctgtatgaaaccctgggcttgtggatg
aagcatgttgctgaggacaagctccaggtccacgttgagagtctgggcctgcagcagttc
caggaagacctacgaccccagcgtctgtccctgtgctgcgctcttctgcagggcctcgct
caggctatggccctgccaaatccccccagtaattgctggaccatcctctgttccacaacc
gagaagatcttcaccctcctgcccaaccaaatgcaggataatgaagtggatttgtatatg
ggagtcgccaaatgtctgtctgagatgtctgatacagaaattgatcgaatcgctcgagtc
acagagactcagatggagaagacatgcttcatcctgacttacctgacttcccaaggcaga
gttcccctccttggtctcaatgacatcatcgctggcgtgcttcgtggttggtcgagccgc
agagtcggctggctcctcctgcaaactttttatcagtgtcgcctggccaccagctccaac
acaggcgtttccaatcgaatggagtggctcctggagctgatgggccacattcgaaatgtt
gtgtacggtgcaacctctgtcacatgtggagacaccaaactggctaccgacttcctgttc
caggtttttgctgctgctgtagtttcctggggtgaccatttcatgcccctcctccttggc
attaaggcccagtggttcccatggcaaccaggctccaagcctcgagctctacaacatagt
ctgtacggagaggagtcgctaactgaccgtgccctgctgcagtgtctgctgggaatgtcc
cacagcctgcctctgcttctggacaaagagccctggagcagccagacacaaaagttcata
gattggcttctcagcatcacagaaggtcctgaccagtgtgtgtcgaccacaaccatcatg
acagccaaagctgctctgttggccctgaagtcctctgctgagttcaaaaggaaagctgtg
tggaccagagcttatggctggtag
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