Xiphias gladius (swordfish): 120800311
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Entry
120800311 CDS
T07311
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120800311 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120800311 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120800311 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xgl00535
]
120800311 (col9a1a)
Proteoglycans [BR:
xgl00535
]
Extracellular matrix (ECM) proteoglycans
Others
120800311 (col9a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120800311
NCBI-ProteinID:
XP_040002262
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Position
LG15:4721052..4741862
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AA seq
697 aa
AA seq
DB search
MALSRICRESVLVLLLQIVLICSAQRGPVGPRGPVGPPGAAGVAGVDGIDGPDGDNGRDG
VPGAPGLPGADVVIASFNPGVRLLVNAAVRAEDLLDLLGIQAQWGHRGQREILGYEGLLG
SRSQLGGKAREGEPTGITGSRSNAARKGIPGTDGLPGELGKVGAPGLPGVYQGEDLCPNS
CPSGLNGHSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGLLGEVGAQGLPGPGGPRGLP
GIMGSKGDRGPRGKPGDGGPRGIQGGPGDRGPQGIRGVPGPKGEPGLLGPDGREGIPGLP
GSKGLPGKNGAPGDAGLQGLPGLPGSYGQKGHSGAKGTTGGPGAVGMMGYSGKQDKNRPS
DVLFVSRESVATRERWDLSDPEEDQVNEDIEGLKGLQDHQEPGEAKGIRAFQDFLALLVF
VARKETGVQSVLMGLRETRSAVPASFQGPSGAEGTPGDRGDLGDQGELGEKGSTGPPGDT
GNKGPEGGRGQQGKEGKLGQPGPRGMQGDMGVPGLPGAQGPAGKSPTDTHIKQVCMRVMQ
EQLAQLAASLSRPESGIAGLPGPPGLPGPPGPSGENGFPGHTGSRGLPGLKGPPGLMGRK
GPKGDQGDSGDRGPTARGPKGAPGAPGLPGEPGRPAYGKDGRDGERGPRGVSGTPGVPGP
PGPAGLNGYCESSQCVLPMVASPVSAKDSGMKGPSEM
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccaggatctgtcgggagtccgtgctggtgctgttgctgcagatcgtgctg
atttgctccgctcagaggggcccggtcggtcccagagggcccgtggggccgcccggagca
gccggcgtggccggtgtggatggcattgatggtcctgacggtgataacggcagagacgga
gttcctggagctccgggccttccaggcgcagatgtcgtcattgcgtcatttaaccccggt
gttcggttattggtaaatgctgccgtgcgggcagaggacctgttggacctcctggggatc
caggcccagtggggccacaggggtcaaagggagatcctggggtacgagggcctcctgggg
agccgatctcagctcggggggaaagcacgggagggcgagccgacagggatcaccggttca
cgctcaaatgctgctcgcaagggtatccctggtacagacgggctaccaggcgaactgggc
aaagttggagcccctggacttccaggcgtgtatcagggcgaggacctgtgtcccaactcc
tgcccctctggtctgaatggacactctggtctccccggcatgaaaggccacaaaggggtc
aagggtgaatcgggtgaacccggaagacaaggacacaagggagaggaaggtgatcaagga
ctgctgggagaagtcggagctcaaggactaccaggcccaggtggaccaagaggcctccca
ggaataatgggctccaaaggggacaggggacctcgtggaaagcccggtgacgggggccct
cggggaatccagggaggcccaggggatcgaggcccccaaggaatcagaggagtgccgggg
ccaaagggagagcctggcctactgggtccagacggtcgtgagggaatacctgggctgcca
ggatccaagggtcttccagggaaaaatggggctccaggtgacgctggcctacaaggactc
cctggtttgccgggctcttacggccaaaaaggacacagtggtgcgaagggtaccacaggt
ggaccaggggctgtaggtatgatgggatattcagggaaacaagacaaaaaccggccttct
gacgtcttatttgtttccagggagagcgtggcgacaagggagaggtgggacctgtcggac
ccagaggaggaccaggtgaacgaggacatagagggcctgaagggcctccaggatcaccag
gagccaggggaagcaaaggggatccgggccttccaggacttcctggccctgctggttttc
gtggccagaaaggagacaggggtgcagtcggtgttgatgggcctaagggagaccagatct
gccgtgcctgcttccttccagggaccttcaggtgctgaagggacaccaggagacagagga
gacttgggtgaccaaggagaactgggagagaaaggatcgacaggcccaccaggagacacg
ggaaataaaggacctgagggcggccgaggacagcaggggaaagagggcaagctgggccaa
ccgggacctcgcggcatgcagggcgacatgggggtaccaggcctcccaggagcgcaggga
ccagcgggaaaatcaccgacagatacacacatcaaacaagtctgcatgagggtaatgcaa
gagcagctggcccagctagcagccagcctgagcaggcctgagtcgggcatcgccgggctg
cccggtccccccggcctgcctggacctccgggcccctccggggagaacggcttccccgga
cataccggatcacgaggacttcccggtctgaagggtccgcctgggctaatgggtcgcaaa
gggcccaaaggtgaccagggggacagtggcgacagaggacccacagcgagaggacccaaa
ggagcgccgggtgcccccggtctaccaggtgaaccgggccgaccggcttacggcaaagac
ggccgtgacggagagaggggacctcgcggcgtttccggaactcccggcgttcctgggcct
cctggccccgccggtctgaacggttactgtgagtcgtcgcagtgcgtcctgccaatggtg
gcgtcgccggtttcagcaaaggactccggcatgaagggccccagtgagatgtga
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