KEGG   Xanthomonas graminis: KFS84_11930
Entry
KFS84_11930       CDS       T10672                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
xgm  Xanthomonas graminis
Pathway
xgm02024  Quorum sensing
xgm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xgm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KFS84_11930 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KFS84_11930 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xgm03019]
    KFS84_11930 (hfq)
   03036 Chromosome and associated proteins [BR:xgm03036]
    KFS84_11930 (hfq)
Messenger RNA biogenesis [BR:xgm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KFS84_11930 (hfq)
Chromosome and associated proteins [BR:xgm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KFS84_11930 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UKE53106
LinkDB
Position
complement(2699744..2700019)
AA seq 91 aa
MSKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQQNEGGSAEDDEAE
NT seq 276 nt   +upstreamnt  +downstreamnt
atgtccaaggggcaatccttacaggatcctttcctgaacgcgctgcgtcgcgagcgggtg
ccggtttcggtgtacctggtcaacggcatcaagctgcaaggtaccatcgagtccttcgac
cagttcgtggtgctgttgcgcaacaccgtgagccagatggtctacaaacacgccatttcc
accgtggtgccggcacgcaacgtgcgcgtcggaccgggcggtggttatgtgcagcagaac
gagggtggtagtgcggaagatgacgaagccgagtaa

DBGET integrated database retrieval system