Xiphophorus hellerii (green swordtail): 116712688
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Entry
116712688 CDS
T07363
Symbol
col9a1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116712688 (col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116712688 (col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116712688 (col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xhe00535
]
116712688 (col9a1)
Proteoglycans [BR:
xhe00535
]
Extracellular matrix (ECM) proteoglycans
Others
116712688 (col9a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116712688
NCBI-ProteinID:
XP_032408394
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Position
22:12533623..12554399
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AA seq
679 aa
AA seq
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MAGFAGINGSFLVVILQLVLLCFSQRNQGPPGPPGPPGVPGVDGIAGERGLDGQDGFPGP
DGDAGKPGSSGLPGIPGNVGLTGPVGDPGPDGPPGQKGEPGKSGPRGAADVGPDGSPGPP
GPGGLLGELGKVGPPGAMGVRGPQGPRGPSGPRGAAGMLGTSDLCPNSCPPGTPGHPGLP
GMKGHKGAKGEAGEPGKQGHKGGEGDQGGPGDVGSQGPTGPQGIRGATGMMGPKGEIGAR
GPDGDSGPQGVAGATGDRGQRGVMGEPGIKGEMGVLGPQGITGLPGPKGEAGLPGVEGRD
GIPGLPGAKGNIGKPGVPGEIGLQGLPGLPGTPGPKGLSGPKGDSGKPGFPGTLGSAGKQ
GERGEQGEVGPIGPIGEPGDPGEQGPVGPAGKPGARGPKGDPGLPGLPGPPGLPGVKGEK
GERGEAGPKGEQGAQGDEGNPGERGELGDAGESGSKGEAGISGEPGKRGPEGRRGQPGIE
GPPGTPGPRGMQGNRGPRGIRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GIAGLPGKPGPPGPPGPSGDNGFPGQAGARGLPGLKGPPGAMGNKGPKGDMGDRGSRGPT
VRGPKGQSGPPGLPGEPGKPGYGQDGQDGQRGPPGVPGQPGVPGPPGPAGLNGYCDPSAC
NLQAGAVQQSLDVKGPTGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctgggtttgcaggcattaacgggtcttttctggtggtgatcctgcagcttgttctc
ctttgcttctctcaaaggaatcaagggccccctggcccacctggacccccaggagtccca
ggagttgatggcatagctggtgaacgggggttagatggccaggacggttttcctggccct
gatggggatgcaggtaaacccggttcttcaggattacccggaattcctggaaatgttggt
ttgaccggccctgttggagaccctgggcctgatggtcccccgggacagaaaggtgaacct
ggaaagtccggacctcgtggagctgctgatgtcgggcctgatggatcccctggaccacct
gggcctggaggacttctgggtgaattgggaaaagttggacctcctggagcaatgggtgtg
agagggccacaaggaccccgtggaccatcagggcccagaggtgcagctgggatgcttggt
acttccgacctgtgtccaaactcttgtccacctggtaccccagggcatcctggtctacct
ggtatgaagggtcacaaaggtgcaaaaggtgaagcaggagaacctgggaagcagggacac
aagggtggggaaggagaccagggaggtccaggagatgttggatcccagggtccaacggga
ccacagggaatacgtggagccacgggaatgatgggccccaagggagagataggagctcga
ggtcctgatggagattcaggtccacagggagttgcgggggccactggagacaggggtcaa
agaggagtaatgggagaacctgggattaaaggtgaaatgggtgttttagggccacagggg
atcacagggcttccaggtccaaaaggagaagctggattacctggtgttgaaggccgtgat
ggcattcctgggttgccgggtgcaaagggaaacatcggcaagccaggagttcctggagag
attggacttcaggggcttcctggtttgcctggaacacctggaccaaaaggcttgagtggc
ccaaagggagattctgggaagcctgggtttcctgggacattgggatctgctggaaaacaa
ggtgaaaggggagaacagggagaagtgggacccatcggacccatcggggagcctggagat
cctggagagcaaggtcctgtaggtccagctggcaagccaggtgcaaggggaccaaaaggt
gaccctggtcttcctggtctcccagggcccccaggcctgcctggagtgaagggagaaaag
ggtgagcgtggagaagcaggacccaaaggagaacaaggggctcaaggtgatgagggaaat
cctggagagagaggggaacttggagatgccggggaatctggatcaaaaggagaggctggt
atttctggtgaacctggcaaaaggggtcctgagggacgccgaggccagcctggcatcgag
ggccctcctggcacacctggaccacgaggcatgcaggggaacagaggtccacgtgggatc
cgggggtctcaggggcctgcgggcaaggagccaagcgatcagcacatcaagcaagtctgc
atgcgagttatgcaagagcagctggctcagttagctgctagtctaaggaggccagagtct
ggcattgcaggtttaccaggaaaacctggccctcctgggcctccaggaccctcaggagac
aacggttttccagggcaagctggagcaaggggccttccaggactcaaaggaccaccaggg
gcaatgggaaataaaggtcccaaaggtgacatgggagatagaggttccagagggcccact
gtacgaggacctaaaggccagtcaggacctcctgggcttccaggagagccagggaaacct
gggtatggtcaagatggtcaggatgggcagaggggacctcctggcgtgccaggacagcct
ggcgtgcctggtcctcctggtccagctggcctgaacggctattgtgacccgtcagcctgc
aacctccaggcaggggctgtccagcagtctctggatgtgaagggacctacagggaactaa
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