Xiphophorus hellerii (green swordtail): 116712897
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Entry
116712897 CDS
T07363
Name
(RefSeq) integrin alpha-5-like
KO
K06484
integrin alpha 5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03266
Virion - Herpesvirus
xhe04145
Phagosome
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04517
IgSF CAM signaling
xhe04518
Integrin signaling
xhe04810
Regulation of actin cytoskeleton
xhe04820
Cytoskeleton in muscle cells
xhe05100
Bacterial invasion of epithelial cells
xhe05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
116712897
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116712897
04517 IgSF CAM signaling
116712897
04518 Integrin signaling
116712897
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116712897
09144 Cellular community - eukaryotes
04510 Focal adhesion
116712897
09142 Cell motility
04820 Cytoskeleton in muscle cells
116712897
04810 Regulation of actin cytoskeleton
116712897
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116712897
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
116712897
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116712897
04515 Cell adhesion molecules [BR:
xhe04515
]
116712897
04090 CD molecules [BR:
xhe04090
]
116712897
Exosome [BR:
xhe04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116712897
Cell adhesion molecules [BR:
xhe04515
]
Integrins
Integrin alpha subunits
116712897
CD molecules [BR:
xhe04090
]
Proteins
116712897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_2
Integrin_A_Ig_1
Integrin_A_Ig_3
FG-GAP
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
116712897
NCBI-ProteinID:
XP_032408663
LinkDB
All DBs
Position
22:complement(1045012..1093205)
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AA seq
917 aa
AA seq
DB search
MGALPGLSPSYRPRGDRRCRAALLLPVVAAALQLCAAFNLDAEGRSVFTGKRGSYFGYSV
EFFGNSSSISVLIGAPKANTSQPNVTEGGAVYHCSWSQNNCSVINFDQQGDRHFYINGVN
TQVEFKSHQWFGAIVRSHGNSILACAPRYYWRTEHDTPFSDITGTCYLSVDALKTFVEFA
PCRTERHGPAGQGYCQGGFSADFTKDGRVVLGGPGSFYWQGQLISATTEEIVKAYYPSYF
LLSVAGQIQTRQVQGSYDDSYLGYSVTSGEFSGDAEEDFIAGVPKGLMLYGLVSVLSGKD
LKSVLNLTGEQMGSYFGYAVAATDINNDGLDDLVVGAPTFMHPGFNGRLEELGKVYVYLQ
RGPLRLEPAQTHLLGSQVFGRFGTSLAPLGDLNQDGFNDMAVGCPYGGDQQQGVVFIHNG
HAGGLKDTPTQVLSGQWASSSFPASFGFALRGDMDIDQNGYPDLIVGAFGLDKAVLYRAR
PIVRAGASLTVQPAMFSPEEKTCSLITEERNVSVSCVSTRFCLEAYGKHLPSHLGFLVEV
QLDRAKQNQKESVRRALFLESQQPTLLRTLNLTNGQGFCHEIKIYLRAEDEFRDKLSPID
ISLNFSLDGRVAADQHGLSPILDYQTEQRVEQKAQIQLDCGEDNICVPDLKLAVIGDKSE
VYLGDENALSLIFNARNEGEGGAYEAELYVVLPPEADYSGIARNNGSLTQLTCSYEADNQ
TRHLVCDLGNPMKSGSSLWAGLRFTVPRLTDANDVVQFQLQIRSKNFNNSDSNEVLLEVQ
VAAKAEVILQGVSRPDKVIFPPPSWSARQSLGAEQDVGPELQQVYELVNNGPSVVSRTTL
EVRCPLRAQGHALLYPVEVITVGPLSCSSKTTFNALKLKVRTHTSAHCMLMFLYGGFEFG
HNTGGQNDGPAETGRCR
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcccttcctggactctcaccttcgtaccggccgcggggagaccgccgctgccgc
gccgcgctgctgctacctgtagtggcggccgcgcttcagctttgtgccgcttttaacctg
gacgcggagggacgctccgttttcacgggaaagcgggggagttatttcggatattccgtg
gaattcttcgggaactcatccagtatcagtgtccttattggagctccaaaagccaacacc
agtcagccgaacgtcaccgagggaggagctgtgtaccattgttcctggagccagaacaac
tgcagcgttatcaactttgaccagcaaggtgaccgccatttttacataaatggtgtgaac
actcaagttgaattcaagtcccatcagtggtttggcgctattgtgcgttcccatggtaac
agcatcttggcctgtgctcccaggtattactggaggacagaacacgacacgccgttctct
gacatcacaggaacctgctacctctctgttgacgctctcaaaacctttgtggagttcgcc
ccgtgcagaacagaaagacacggccctgctggacagggttactgtcagggaggattcagt
gctgactttaccaaggatggaagggttgttcttggagggcctggcagcttttactggcaa
ggtcagctgatttcagccactacagaggagatcgttaaggcctactacccctcctacttc
ctgctgtcggtcgctggacagattcagacccggcaggtccaggggagctacgacgacagc
tacctgggttactctgtgaccagcggcgagttcagtggggacgctgaggaagatttcatc
gcaggagttccaaaaggactcatgctgtatggtttagtgtccgttttaagtgggaaggac
ctgaagtctgtgctgaacctgacgggtgaacagatggggtcttacttcggctacgcagtg
gcggctactgacatcaacaacgacggattggatgatctggttgttggagcgccgacattc
atgcacccggggttcaacgggcgtctggaggagctggggaaagtgtacgtttacctccag
aggggcccgctgcgtctggagccggctcagacccatctgctgggctcacaggtcttcggt
cggtttggcacctctctggctcctctgggtgacctcaaccaggatggcttcaacgacatg
gccgtcggctgtccgtacggcggagaccagcagcagggcgtggtcttcatccataacggt
cacgctggaggactgaaggacacgcccactcaggttctttctggccaatgggcttccagc
tctttccctgccagcttcggctttgctctgcgaggcgacatggacatcgatcagaacggc
tacccagatctgattgttggtgctttcggccttgataaggccgtcctgtacagagcgcgg
ccgatagtgagagccggtgcttctctcaccgtgcagccggccatgttcagcccggaggag
aagacctgttcgctcatcacagaagagagaaacgtctccgtttcctgtgtgagcaccagg
ttctgtctggaggcctatgggaagcacctcccctctcatttaggcttcctggtggaagtg
cagctagacagagcaaagcagaaccagaaggagtctgtgaggagggcgctgttcctggag
agccagcagcccaccctgctgaggaccctaaacctcacaaatggtcaagggttctgccat
gaaatcaaaatctacctgcgggccgaggacgagtttcgggataaactctctcccatcgac
atcagcctgaacttcagtctggatggtcgggtggcggcggatcaacacggcctcagtccc
atcctcgactaccagacagagcaacgtgtagagcagaaggcccagattcagctggactgc
ggagaggacaacatttgtgtccctgacctcaaactggctgttattggtgacaaatcagag
gtctacctgggcgacgaaaacgccttgagcttgatctttaatgccaggaacgagggagag
ggaggggcttatgaggcggagctgtacgtggtgctgcctccagaggccgactacagcggg
atcgcacgcaacaacgggagtctgactcagctgacctgcagctacgaggccgataaccag
acccgccatcttgtgtgcgatctgggaaaccccatgaaatctggcagcagcttatgggcc
ggccttcgattcactgtgccgagactgacagacgctaacgatgttgtccagtttcagctc
caaatacgaagtaaaaacttcaataactctgacagtaacgaggttctgctggaggtgcag
gttgctgccaaggctgaggtgatcctgcagggtgtttctcggccagacaaagtcatcttc
cctcctcccagctggagcgcccgtcagagcctgggggcggagcaggacgttggccccgag
ctgcagcaggtttatgagttggtgaacaacggccccagtgtagtgagccgcacgacgtta
gaggtgagatgtcccctgagggcccagggccacgctctgctctaccctgtggaggtgatc
actgtgggcccactcagctgctcctccaaaacaaccttcaatgcactgaaactcaaggtt
aggacacacacatctgcacattgcatgttaatgtttctatatggaggtttcgagtttggg
cacaacaccggagggcaaaatgacggacctgctgaaactgggagatgtaggtaa
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