Xiphophorus hellerii (green swordtail): 116719201
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Entry
116719201 CDS
T07363
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
116719201
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116719201
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
116719201
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
116719201
NCBI-ProteinID:
XP_032417544
LinkDB
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Position
4:complement(549783..583633)
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AA seq
1211 aa
AA seq
DB search
MLSWVVKVVPQPPELPSKNTEDAKEGKPEAAPPPAVAPPTAPEKKVTFEDECKKDADKLN
QDVEAGNGPGPGMLTWISSALPLPAPPANQNRAYSAAKEEAAASKPDDEKGMMAWISQGL
EKVVPQPELRSRESPAAEQQLQVQQAAAPTDAQRAGKELEPVDQTAPPSMMDWFKHGIVK
VVPQPENLPKTEGTSKSEAPSKAPPAVPPPATRPTPETEPAKEAEQQPNVVGWIVSGIGR
MLPQPVPRPETGSDDMQNISGAQKMSDLVLEDLEDLEEAQQEAPTVKEADVAEPLTPMDG
VKKEAGDGAHMEERLQRLEAARVAEEMARQAAAEAVRQLEVERSAKIVIETLPESNDQLP
NILEEENEDEPECLVDVCPAEDDPEAAAEERQVESLAPPTAPEPEDQVTPSSTDVEPASE
RRDLESPITQQPEPHFEEAPTHTAEQSEAAAGEEEEAGGSGGSCRNADAPALMLQAAGPD
ELHGLNLSIPQIITTPEPEPSTLMLPQLRADPTAGEEDEELLKARSSQGDDEMRPQSAAS
VASVTVQERLNQLVGLFKGRTERHKDRLADPDESEEESPTASPAKAPPAPPPPPPGQEKK
DEPEPPQEAGLFQFELLGHPVQLPKLPPMPDWLRSILEYRFPSSIDPFTDLIYVIWLFFV
VAAWNWNVWLIPVRWAFPYQTPDNIHLWLLADYTCDFIYIADILVFQPRLQFVRGGDIVC
DKKDMREHYMTTERFKMDVISLFPMEIFYYFTGVNSLLRFPRLLKYMVFFEFNDRMEAVM
KKAYIYRVIRTSTYLLYSLHINACLFYWGSDYEGLGSTKWVYDGKGNAYIRCYYFAVKTL
ITIGGLPDPTTVFEICFQLINYFVGVFAFSIMIGQMRDVVGAATAGENYYRACMDSTVKY
MNSYSIPREVQNRIKTWYDYTWKSQGMLDEQELLIQLPAKMRMDIAVDVNYTIVSKVALF
QGCDRQMVFDLLTRLKSVVYLPGDFVCKKGEIGREMYIIKQGEVQVVGGPDLETVFVTIR
AGSVFGEISLLAGGGGNRRTANVKAHGFANLFILDKKDLAEILVHYPESQKLLRKKAKTM
LTKDKKPEEKETRKEAAEVIPPRPDTPKLFKAALKVTERAGIEGTFAKMKKVYQPAEGQT
EAPPPISPVPPPSPMHRRSPVPRSALEDRDESVAETADSSVIIRMTPRQEGEELLTVEVL
EEGAKREEEEG
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctgggtggttaaagtcgtcccccagccgcctgaacttccatccaaaaacact
gaagatgccaaggaaggaaaaccagaagcggccccgccccctgcggtggccccgcccact
gcaccagagaagaaggtgacgtttgaagatgagtgcaagaaggacgctgacaaactgaat
caggacgttgaagcagggaacggtccgggtccaggcatgctgacctggatcagcagcgct
ctccctctgccggcaccgccggccaaccagaaccgggcctactccgccgccaaggaggaa
gcagcagccagcaagcccgacgatgagaaggggatgatggcctggatctctcagggtttg
gagaaagttgttcctcagcccgaactgaggagcagagagtctccggcggccgagcagcag
cttcaggtgcagcaggcagcagctccaacagatgctcagagagccgggaaggagctggag
ccggtggaccagaccgctccacccagcatgatggactggttcaaacacggcatcgtgaag
gtggttcctcagccggagaacctcccaaagactgaaggaaccagcaagtctgaagctccg
tccaaagcgccccctgcagttcctcctccggccaccagacccactccggagacagaacct
gcaaaggaagcagagcaacagccgaacgtggtgggttggatcgtcagtgggatcggccgc
atgctgccgcagcccgtccccaggccggaaacaggaagtgatgacatgcagaacatcagc
ggcgctcagaagatgagtgacttggtgctggaggacctggaggacctggaggaggcgcag
caggaggcgccgactgtgaaggaggcggacgttgcggagccgctgactccgatggacggc
gtgaagaaggaagcaggcgacggcgctcacatggaggaaaggctgcagcggctggaggcg
gcccgcgttgccgaggagatggcccggcaggcggcggcagaggcggtccggcagctggag
gtggagcgttcggccaagatcgtcatagaaacgctgccggagtccaacgaccagctgccc
aacatcctggaggaggagaacgaggacgaaccggagtgtctggtggacgtctgcccagct
gaagacgatcctgaagctgcagctgaagagaggcaggtggagtctctggccccgccgact
gcacctgagccagaagaccaggtgactccttcgtccactgatgtggagccggcgtcagag
aggagagatctggagagtcccataacccaacaaccagaaccgcactttgaagaggcccct
acccacactgcagagcagagcgaagcagcagcaggagaagaagaagaggcaggaggatct
ggaggaagctgcaggaacgctgacgctccggcgctgatgctgcaggctgcaggtccggac
gagctgcacggactcaacctgagcatcccgcagataatcacaaccccagaaccggagccc
agcacgctgatgctgcctcagctcagagctgacccgacggcaggcgaggaggacgaggag
ctgctgaaggcccggtccagtcagggagacgatgagatgcggccgcagtccgccgccagc
gtggccagcgtcacggtccaggagcgcctcaaccagctggtcgggctcttcaagggccgg
acggagcggcacaaagaccgcctggcggatcccgacgagtccgaggaggagagccccact
gcctctcctgccaaagctccgccggctcctccgccgcctccgcctggacaggagaagaag
gacgaacccgaaccaccgcaggaggcgggtctgttccagtttgaactcctgggacatccg
gtccagctccccaaacttcccccgatgcccgactggctgcggtccatcctggaataccgc
ttcccgtccagcatcgatccgttcactgacctcatctatgtgatctggctgttcttcgtg
gtggcggcctggaactggaacgtgtggctgatcccggtgcgctgggcgttcccctaccag
acgccggacaacatccacctgtggctgctggccgattacacctgcgacttcatctacatc
gcagacatcctggtcttccagccgcggctgcagttcgtccgcggcggagacatcgtgtgt
gacaagaaggacatgagggagcattacatgaccaccgagcggttcaagatggacgtcatc
agcctgttccccatggagatattttactacttcacaggagtgaactccctgctgcgcttc
ccccgcctgctgaagtacatggtgttctttgagtttaacgaccggatggaggccgtgatg
aagaaggcctacatctacagggtgatccggacctccacctacctgctctactcgctgcac
atcaacgcctgtctcttctactggggctccgactacgagggtctgggatccaccaagtgg
gtctacgacgggaaaggcaacgcttacatccgatgttactactttgctgtgaagacactg
atcaccatcggaggactgccagaccccaccaccgtctttgagatctgcttccagctcatc
aactactttgtgggcgtgtttgcgttctccatcatgatcggccagatgagggatgtggtg
ggagcagcgactgcaggagagaactactaccgggcctgcatggacagcaccgtcaagtac
atgaactcctacagcattccccgggaagtccagaaccggatcaagacttggtacgactac
acctggaagagccagggcatgctggatgaacaggaactcctgattcaacttcctgctaag
atgaggatggacatcgccgtagacgtcaactacaccatcgtcagcaaagtggccctgttt
cagggctgtgacaggcagatggtgttcgacctgctgaccaggctgaagtctgtcgtttac
ctgccgggagacttcgtgtgtaaaaagggggagatcggacgggagatgtacatcatcaag
cagggggaggtccaggtggtgggcgggccggacctggagactgtgttcgtcaccatcaga
gccggttccgtgttcggagagatcagcctgctggcggggggcggagggaaccggcgcacc
gccaacgtgaaggcgcacggcttcgccaacctgttcatcctggacaagaaggacctggca
gagatcctggtccactaccccgagtcccagaagctgctgcgcaagaaggccaagacgatg
ctgaccaaagacaagaagccggaggagaaggagacgcgcaaggaggcggccgaggtcatc
cccccccgacccgacacccccaaactgttcaaggccgccctgaaggtcacggagcgcgcc
ggcatcgagggaacattcgccaagatgaagaaggtttaccaaccggctgagggccaaacg
gaggctccgccccccatctctccggtgccgcccccttctccgatgcaccgccgctctcca
gtcccgcgctcggctctggaggacagggacgagtcggtggcagagacggcggacagctcc
gtcatcatcaggatgacaccgcggcaggaaggggaggagcttctgacggtggaggtgctg
gaggaaggagcaaagagggaggaggaggagggatga
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