Xiphophorus hellerii (green swordtail): 116727006
Help
Entry
116727006 CDS
T07363
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xhe03037
]
116727006 (ift140)
Cilium and associated proteins [BR:
xhe03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
116727006 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR55
TPR_COPA_B
TPR_IFT80_172
Beta-prop_EML
ANAPC4_WD40
WD40_Prp19
Clathrin
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
TPR_GEMI5
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
Beta-prop_ELP1_2nd
PPR_1
Rax2
TPR_19
Motif
Other DBs
NCBI-GeneID:
116727006
NCBI-ProteinID:
XP_032429903
LinkDB
All DBs
Position
10:1695018..1733136
Genome browser
AA seq
1442 aa
AA seq
DB search
MAVYFDHRIEAPDRSNLPSHLTWHSTLPILAVASSGPASGGSVDLYLQQGECVKSCHVDR
TQPAAVLRWHPVKPVLVLGWESGEVVLLTHPSGDQTVLPAVHTARIALLEWSGSGSRLVT
GDQNGALAVWKLDARGRLLGNYLVKHDYNKPLTCCIFKPASPGVDVAMLARASVSGDESA
LDMFSWKGAPLKMGPQEGLGFYISTSDGKVHAVDEQGKTSLLLSEDGSIRKLFYLEKRGV
LVVVTDTLMLSQYTLRPEGGAHEFMKVKLSSTAGQNVDIIWTENSLLITATGEPVIKIWD
LERDENYVLSLDETLGFKKGEMINCVSYCAAKEILAAGTSKGRIAMWKTAMQPMSSSSYR
ADAKALWKLQTPTEIHGNVTELQWGSNQNLLAANNSRTVLILSEHVMSAHFSQQVAAVQL
APTQLSITNFSRGETLPLQCDMHIRGVCVSKDSVTVWNGKHISVFELSGTALHVTGSFPC
DSHIVAVHDENLYTVEPNRVQIRTPQGTVKQLLTFSRAEGNPVLLDVCQSYLAVGTDTAH
IRVYDLSRRDAKAHCGAKNLSDHISDLGALRSIKCNASGSQVSLLASQVNGRPDHKVYFY
DIEMDTVTHFDFFTGRPSTGVSPPDESDKQKFQENEISGRFPVAHCWDESEPRLFVCETA
PICSEKSANAFSDLEDVSVVTLFCTQEHGLLLQDCFSRPSGLQALLALDVPYYYFTCKPG
EENPEVSPPSDQPIRAAPASPPVMASRRPLRDFVGLEKCEKGTRDAMLNFSFYLSVGDMD
EAFKSIKLIKSKAVWENMARMCVKTRRLDVARMCLGNMGNARAAKAVKEAEAESEPEARV
AMLAIQLGMLEDAEKLYKSCHRYDLLNAFYQAFSEWPRALETAEAHDRIHLRTTYYNYAK
YLESMGHKNLALAYYEKSDTHRVEVPRMLQDDTVSLEVYVTKAKDKNIYKWWAQYLESQS
NMERALLFYERAQDYLSLVRVHCYLGNIPEASQIANNTGDRAASYHLARHYEGHEDIKQA
VHFYTRAQAYNNAIRLCKENSLDDQLMNLALLSNPEDMMEAACHYEEKGKHLDRAVALYH
KAGYVSKALELAFATEQFAALQLIAEELNENSDPALLARCSDFFVQHSQYEKAVELLAAA
KKYPEAVELCLTHNLTITEDLAERMTVTDSKDLTEEAGKALLEKIADCCMSQGSYHLATK
VYTQAGNKHRAMKALLKSGDTDKIAFFANVSRQKELFIMAANYFQSLDWRKNPKNLKRII
EFYTKGKAPDLLGGFYEACAQVEIDDYQNYEKALDALMEAFKCLSKAKDGSSGQQEVRLA
DLQHKIVLIKKFVHIRRLYSEDPDEAVRMCEALLEEPELNPAVRIGDAFGFLIDHHCQQG
RLQTAYQKLEELQKLLPSQSIRYYISQASLDALQKEMGFPLESGDHKHVLREDDEVEEDL
TV
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtatttcgaccaccgcatcgaagcccccgacagaagcaatctgccgtctcat
ctgacctggcactccacgcttcccatcctggctgtggcgtcgagcggccctgcttctggt
ggcagcgtggatctttacctgcagcagggtgagtgtgtgaagagctgccatgtggaccgg
acccagccggccgccgtgctgcgctggcatcccgtaaagccggttctggttctgggctgg
gagagcggggaggtggtgctgctcacgcatccgtccggagatcagaccgtgctgcctgcc
gttcacacggcccgcatcgcgctgctggagtggagcggctccggaagccgcttggtaacc
ggagatcagaatggagctctggccgtgtggaaattagatgccagagggcgacttttagga
aattacctcgttaagcacgactacaacaaacctttaacctgctgcattttcaagcctgcc
tctcctggggtcgacgtggcgatgttggcgcgggcgtcggtgagcggagacgaatcggct
ctggacatgttcagctggaaaggggcgcctctgaagatgggtcctcaggagggactgggc
ttctacatcagcacctccgacggaaaggtccatgctgtggacgaacagggcaagacgagc
ctgctgctgagcgaggacggctccatcaggaagctcttctacctggagaagagaggcgtg
ctggtggtcgtcacggacaccctgatgctgtcgcagtacacactgagaccagaaggggga
gctcatgagttcatgaaggtgaagttgagcagcacagccgggcagaacgtcgacatcatc
tggaccgagaacagcctcctcatcacagcgacaggcgaaccagtcatcaaaatttgggac
ctggagagagatgagaactacgttctatctctggacgaaactctgggatttaagaaggga
gagatgatcaactgtgtttcctactgcgcagccaaagagatcctggcagctggaacctcc
aaaggtcgcatagcgatgtggaagacggcgatgcagccgatgagcagcagcagctacaga
gccgacgctaaagccctgtggaagctgcagactcccactgagatccatggaaacgtcacc
gagctgcagtggggctccaatcagaacctgctggccgccaacaactccagaacggttctg
atcctcagtgagcatgtgatgtcggcgcacttcagccagcaggtggcagcagtgcagctc
gccccgactcagctcagcatcacgaacttcagcagaggagagacgcttcctctgcagtgt
gacatgcacatcagaggagtgtgtgttagcaaggactctgtgacggtctggaacgggaaa
cacatctctgtctttgagctctcagggacggctctgcatgttacaggatcatttccttgt
gattcccacattgttgctgttcatgacgagaacctttacaccgtggaaccaaacagagtc
cagatccgaacacctcaggggacagtgaagcagctgctaactttctccagggccgaggga
aaccccgtgctgctggacgtgtgccagtcgtacctggcagtaggaacagacacggcacac
atcagagtttacgacctctccagacgagacgccaaagctcactgcggcgctaagaatttg
tccgaccacatcagcgacctcggcgccctgaggtccatcaaatgcaatgccagcggcagc
caagttagcctgctagcctctcaggtcaacgggcgacccgatcataaagtatatttctac
gacatcgagatggacaccgtgacgcactttgacttcttcaccggcagaccgtccactggc
gtctctccgcctgatgaaagcgataagcaaaagtttcaggaaaatgaaatcagtggccgt
tttcctgtggcccactgctgggatgagagcgaacctcgactctttgtctgcgagaccgcg
ccgatctgctcggagaaatcagccaacgctttctcagatttggaggacgtgtcagtggtg
acgctcttctgtacgcaggaacatggactcctgcttcaggactgcttctccaggccttca
ggccttcaggccctcctcgccctggatgtgccatactactactttacctgcaagccaggt
gaggagaacccagaagtgtctccaccgtcagatcagccaatcagagcggctcctgcttcg
ccccccgtcatggcgtccaggcgtcctctcagagactttgtgggcctggagaagtgcgag
aagggaacgcgggacgccatgttgaacttcagtttctacctgagcgtgggcgacatggac
gaagccttcaagtccatcaagctcatcaaaagtaaagcggtgtgggaaaacatggcacgg
atgtgtgtgaaaacccgccggctggatgtggcccgaatgtgcctggggaacatggggaac
gccagggcagcgaaagccgtgaaggaggcggaggccgaatccgaacccgaagcccgggtg
gccatgttggccattcagctcggcatgctggaagatgcagaaaagctgtacaagagctgt
catcgctacgacctgctgaacgccttctatcaggccttcagcgaatggccgcgagctctg
gagacggccgaggctcacgaccgcatccacctgcgcaccacctactacaactacgccaag
tacctggagtccatgggccacaagaacctggcgcttgcttattatgagaaatcagacact
caccgagtcgaggttcccagaatgctgcaggatgacacggtgtcgctggaggtatacgtc
accaaagccaaagataagaatatctacaagtggtgggcccagtacctggagagccagtcc
aacatggagagagcgctgctgttctacgagcgcgctcaggattacctctctctggttcga
gtccactgctacctgggcaacatcccagaggcgtctcagatagccaacaacacaggtgac
agagcagcatcgtaccacctggccagacattacgaaggtcacgaggacatcaagcaagcg
gtccacttctacacgcgggcccaggcctacaataacgccatacgactctgcaaggagaac
agtctggatgaccagctgatgaacctggcgctgctcagcaacccggaggacatgatggag
gccgcctgccactacgaggagaagggcaaacacctggaccgggccgtggcgctctaccac
aaggccggttacgtctccaaagcgttggagttggcgtttgccaccgagcagtttgctgcg
ctgcagctcattgcagaggagctgaatgaaaactccgaccctgcgctcctcgctcgctgc
tccgacttcttcgtccaacattcccagtatgaaaaggcggtggagttactggcagcggcc
aagaagtatcctgaggcggtggagttgtgcctgacccataacctgacgatcacagaggac
ctggctgagaggatgacggtgacggactccaaggatctgacggaggaggccggaaaggct
ctgctggagaagatcgccgactgctgcatgagtcagggcagctaccacctggccaccaag
gtgtacacacaggccggcaacaagcacagggccatgaaggcgctgttgaagtcgggcgac
acggataaaatcgctttctttgccaacgtttctcgtcagaaggagcttttcatcatggcc
gccaactacttccagtccctggactggcgcaaaaacccaaagaacctgaagcgaatcatt
gagttttacactaaaggaaaggcgccggacctgctgggcggcttctacgaagcttgtgct
caggtggagatagatgattaccagaactatgaaaaggctctggatgctctgatggaggcg
tttaagtgtctgtccaaagcaaaggacggttcctctggacaacaggaagtgaggttagcc
gacctgcagcacaagatcgtcctcatcaagaagttcgtccacatacgcaggttgtactcg
gaggatccagacgaggcagtgaggatgtgtgaagccttgctggaggaaccagagttgaac
cccgccgtccggatcggagacgcgttcggcttcctgatcgatcatcactgtcagcaggga
cgcctgcaaacggcgtaccagaagctggaggagctgcagaagctgctgccgtctcagagc
atcaggtactacatcagccaggccagcctggacgcgctgcagaaggagatgggcttccct
ctggagagcggcgaccacaaacacgtcctgcgggaggacgacgaggtggaggaggacctg
acggtctga
DBGET
integrated database retrieval system
