Xiphophorus hellerii (green swordtail): 116729106
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Entry
116729106 CDS
T07363
Symbol
ttc37
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116729106 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116729106 (ttc37)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
116729106 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_16
TPR_19
TPR_8
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_7
ANAPC3
PknG_TPR
TPR_MalT
TPR_15
Motif
Other DBs
NCBI-GeneID:
116729106
NCBI-ProteinID:
XP_032433339
LinkDB
All DBs
Position
12:complement(20741797..20756418)
Genome browser
AA seq
1569 aa
AA seq
DB search
MSNKEVKAALKSAREAINNKEFKEVLKHCKAVLKLEKNNYNAWVFIGKAASELEQPDQSQ
AAYRKAVELEPEQLLAWQGLANLYENTDQWDFKDELPSVYQKLVELYAKTDKTKSYDMIK
KLSDIYQSDREYLKLAKVWLQLVQLKEEEGVDKKELVQLLQKMTHLLSDCINDEEQDNET
QQHLITAFEKAMILTEPVPGEEHKKLSADYIKCLSKLPHEESKMKEACQTMSSVYPNQTY
PLEVLCSHYLKTNNMDEDAVSCFSRLLEMAPNSGLGHLGLGTKALLEGRYKEAVDDLEKG
VKTVSSAVGWHSLAEAQFKIHRHSDSAASCSHGLNVCTSEDKELRDKLLRLKLEALVRSE
GEQAASQALETFSQITEAEKDPVLLALKGRAYLNKGQIDQSLKLLSELEVSNPNLPQGLA
LRGLAHLAEGQLQLAEQSFLQATKQTPDSGEYFFFLGKLYWDMGSETRKDRSKTHTHLLK
AAKLDPHLGCAFRYLGHYYREVANDIARAQGCYRKAFQLNSGDAESGAALVDLSMGQGDM
DSALAILESVTEKATPGSAKWAWMRRGLYYLKIGEHQQATADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVDEYLQITTQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQSIHNLFRAVQLRPDLSCLWKLLGDACT
AVRVVSPSRAQVVVPTLLSGFDSSTQDHMLNQAQTLKAGERCYAHALKLMPEVASLWYDL
GLNYYHQATNSPRSTDEHQNSLNLEKAQQCLKKAIKMDSGNYSYWNALGVISMSRGLESY
ALAQHCFIKSIEVEPNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQAL
IAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAIS
AAHVALCKYTERIQSDPDAFIMLGYLNEHLQLKRQALQAYQRAVELLQSSSSSEVLVFSL
GSCARALCNSGQWDEAVQVYKSTPLQDLSDLVGLALAYFRAGLYPESISVYERALAVTSN
EKEKAYILTALALLQHQQGNLDSAKTLLFKCSVLKEPISESLLCLCALGLVHSDATLAAA
ALTELLKQGSASGGVVEQRCLLTCSLLALQGNYSAVQREASRAVHSNPGNPSLWALLSRV
IPQYYPRKAQGGAVAGHIACLFSMTQGKRALLFSGVNQVACGRHTGEDPHRNALKTMQKA
VLLCPDDPATWAGLMAACHTENTSCYLSGSAPRRHSLEHTLMSVVSEKVRSVEEMERPLT
QALEGWVLQQAVSGLMQQGQLEQAEALCTQVLNVSPEHPAVMLSLTQVQCQRLLMTDGGT
VLTEQVLEQLNKVIMMNPTNLGAWHWLAEVYRSQGLLVQAVMAYRQSLQLALQLGAHSFQ
IASLLRLALLALGPCMAGVPGNEWKDLVLEATTEVLKLGSSPMALLFQALLQYVTKMTAR
ETRRLLERSVYVSSDDFPVTVVQVASWYLLRHLHAKNDQELLNVLLQHAKMNGNQRLLDF
YTELTSSSS
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataaagaggtgaaagccgctctgaaaagtgccagagaggccattaacaacaaa
gagttcaaagaagtcttaaagcactgcaaggctgttctgaaacttgaaaagaacaattac
aatgcctgggtgttcatcggcaaggcagccagtgaactggaacaacccgatcagtcacaa
gcagcctataggaaagcggtggagctggagcctgagcagctgctggcctggcagggttta
gcaaatctttatgaaaatactgatcagtgggatttcaaagatgaactgcctagtgtctac
cagaagcttgtggagctttatgcaaagacggataaaactaaaagctatgacatgatcaaa
aagctgtcagatatttatcagtctgacagggaatatttgaagctggctaaggtttggctc
cagctcgtccagctgaaggaggaagagggtgtggacaagaaggagttagtgcagttattg
caaaagatgacccatctcctctctgactgcatcaatgatgaggagcaggacaacgagact
caacagcatttgataacagcatttgagaaggccatgattctcactgagcctgtgcctgga
gaggagcacaagaagctctcggctgattacattaaatgtctttcgaaactgccacacgaa
gaaagcaaaatgaaagaggcttgtcagaccatgtcgtctgtgtacccaaaccaaacctat
cctctagaggtcctttgcagccactatctcaaaacaaataacatggatgaggatgcagtc
agctgtttttcccgactcctggaaatggcccccaacagtggattgggtcacttaggtctc
ggtaccaaggctcttctggagggaaggtataaagaagctgttgatgacctggaaaaagga
gtaaagacagtgagctcagcagtgggatggcacagcctggctgaggctcagtttaaaata
cacagacactccgacagcgctgcttcatgctcacacggcttaaatgtttgtacttctgaa
gataaggagctgcgagacaaactccttcgactgaagctggaggctttagtgagaagtgaa
ggagagcaggctgccagtcaggctttggaaacattctcacagattactgaggctgaaaaa
gatccggttctgttggccctgaaaggacgtgcatacctcaacaaaggacagattgatcaa
tcactcaagctcttgtcagagctggaagtctccaacccaaacctgccccagggattggct
ctgagaggactggcacatttagctgaaggtcagcttcagctagcagagcagagcttctta
caggctacaaagcagaccccagacagcggagagtacttcttcttccttggaaaactttat
tgggatatgggctcagagacccgtaaagaccggagtaaaactcacacacacttgttaaag
gcagcaaagttagatccacatctcggctgtgcatttcgctaccttggccattattaccgg
gaggtggcaaatgacatcgctcgtgcacaggggtgctacaggaaggctttccagttaaac
agtggcgatgccgaatctggagctgctttggtggatctcagcatggggcagggagatatg
gacagtgcattggcaatccttgagtcagtgacagagaaagccacaccgggctcagctaag
tgggcctggatgagacgaggcctgtactacctgaagatcggagaacaccaacaagccaca
gcggacttgcaggctgctttgagggcagatcctgaggactgggtttgttgggaatgttta
ggtgaggcctacctcaaccgacggagcttcacagcagctctgaaggccttcggcaaagca
catcagctccagcccagctccatctacagtgtctaccaggcagctgccatcaaacagact
ctgggaaagttcaaggaggccgtggatgagtatttgcaaatcacaacacagcaggactat
gttcctgctctgaaaggccttggggagtgtcagttgtctttggcaaagagtttaatggag
gactgcagagatggaggcgccattgacctcattcaacaatccatacacaacctctttaga
gctgtgcagctgcgaccagacctgtcttgtttgtggaagctgctgggagatgcgtgcacc
gctgtcagagttgtttcgccaagcagggctcaggttgtggtgccaaccttgctgtctgga
tttgactccagcacacaggatcacatgttgaaccaagctcagactctcaaagctggcgag
aggtgttatgcccatgctttgaagctgatgcctgaggttgccagcctttggtatgacttg
gggctaaattattaccaccaggccacaaactcaccccgctctacagatgaacaccaaaac
tctttgaacctagagaaggcacaacagtgcttgaaaaaagctatcaagatggacagtggg
aactacagctactggaatgccttgggggtgatttccatgtccagaggtctggagagctat
gctttggctcagcattgcttcatcaagtccatagaagttgagccaaacaatgttgtcgca
tggacgaaccttggtacgctgtatttaaaaaaggacaacatagagcttgcacatgaagcc
ttcaaaattgcacagtctttggagccactgtatgtcaactgctggattggacaggcgctg
atcgcagaacgcgtgggaagctacgacactatggatcttttcaggcacaccactgaactc
agcacacatatggaaggagtcaaaggttacgcctactgggtttgttccacgctgctggat
aagagcaacagggacagtgaactgtaccgctacaacattgtgcaaatgaatgccatctca
gctgctcatgtagcactctgcaagtacacagagcgaatccagtctgacccagacgccttt
attatgctgggttaccttaacgaacatctgcaactgaagaggcaggccttacaagcatat
caaagagctgttgaacttcttcagtcctcgtcctcttcagaagtgttggtcttctcactt
ggcagctgtgctcgtgctttatgcaactcgggccagtgggacgaagcagtccaggtttat
aagtccactccgctgcaggacctcagtgacctggtggggctggctttggcctacttcagg
gcaggactctatcccgaaagcattagtgtgtatgagcgagccttggctgtgacctccaat
gagaaggagaaggcttacatacttactgctctggccctgctgcagcaccaacagggcaac
ttagactcagcaaagacgctgcttttcaaatgctcggtgttaaaggagcccatctcagag
tctctgctttgcttgtgtgcgctgggattggtgcacagcgacgccacactagctgcagct
gccctgactgagctgctaaagcaagggtctgcctcagggggggttgtagagcagcgatgt
ctgctcacctgctctttgctagcccttcagggcaactacagtgcagtgcaaagagaggct
tccagagctgtgcacagtaatcctggaaatccctccctttgggctcttctgtccagagtg
atacctcaatactaccccagaaaggctcaggggggcgcagtagctggccacattgcctgt
ctctttagtatgactcaagggaagagggcgctgttgttcagcggcgtgaaccaagtggct
tgtgggagacacactggagaggatcctcacaggaatgcactgaagaccatgcagaaagct
gtcctgctctgccctgatgatccagcaacatgggctggattaatggcagcctgtcacact
gaaaacacctcctgttatctttctggctctgctcctcgccgacactcattggaacacact
ctgatgtctgtggtttctgagaaagtgcgtagcgtggaggagatggagcgccccctaacc
caggctctggaaggctgggtgttacagcaggctgtgtctggtctcatgcaacaaggacag
ctggagcaagcagaggctctttgcacgcaggttctcaatgtgtcccccgagcacccagca
gtgatgttgtcactgacgcaggttcagtgccagcgcctcctcatgaccgatggtggtact
gtccttacagagcaggtcttggagcagctaaacaaagtcataatgatgaaccccaccaac
cttggagcatggcattggctggctgaggtttaccgtagccagggcctcctggtccaggct
gtgatggcttacagacagagcctacagcttgccctgcagctgggcgcacacagcttccag
attgccagcctcctccgactggctctgctggctcttggaccctgcatggctggagttcct
ggaaatgagtggaaggatcttgttctggaagccactacggaggttttgaagctgggctct
tctcccatggccctcctcttccaggccttgctccaatatgtgaccaagatgactgcaagg
gaaacgaggcgtttgctggagaggtccgtttatgtttcatctgatgatttcccagtaacg
gtggtgcaggtggcgagttggtacctcctcagacacttgcatgccaaaaatgatcaagaa
ctccttaatgttcttctgcaacatgccaaaatgaatggaaatcaaaggttgttggatttt
tacacagaactaacatcttcctcatcatga
DBGET
integrated database retrieval system
