Xanthomonas indica: Q7W82_07370
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Entry
Q7W82_07370 CDS
T10539
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xin Xanthomonas indica
Pathway
xin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q7W82_07370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xin03021
]
Q7W82_07370 (rpoB)
03400 DNA repair and recombination proteins [BR:
xin03400
]
Q7W82_07370 (rpoB)
Enzymes [BR:
xin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q7W82_07370 (rpoB)
Transcription machinery [BR:
xin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q7W82_07370 (rpoB)
DNA repair and recombination proteins [BR:
xin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q7W82_07370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XCI81961
UniProt:
A0AAU8IA21
LinkDB
All DBs
Position
1710201..1714352
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENTDPNKRSDHGLHAALKS
VFPISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLSEFFEINTFHIDPK
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEASGIAALAVPDEYLVG
RILSHDVVDASTGELLASANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
TGESVLYDKKYFGERNDEESKRLVAEHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGQITDEVEYLSAIEENEYVIAQANALHDAKSRLTEQ
FVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILESAIYARLRGQLIGKVANGGPNLK
KGDTISDAYLDGLKKSDWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSMIQPIEDMPYMANGETVDIVLN
PLGVPSRMNIGQVLEVHLGWAAKGLGRKIQNMLEAQAKVADLRKFLAQIYNHDQKLGEDR
VDLDQFSDAELLALSKNLTDGVPMATPVFDGATEAEIKHMLELADLPISGQTQLYDGRTG
EAFDRHTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LED
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaagaagcgtatccgcaaggacttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgcttgccatccaggtggattcctaccgcgagttcctg
caggagaacaccgacccgaacaagcgttcggaccacggcctgcacgcggccctgaaatcg
gtgttcccgatctccagctacagcggcaacgcggcgctggagtacgtcggctacaagctc
ggcgaaccggtgttcgacgagcgtgaatgccgccagcgcggcatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcctcgaccaaggcgatcaag
tacgtcaaggagcaggaggtctacctcggcgaaatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggcaccgaacgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccgtaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgctcggctac
tcgaacgaggagatgctctcagagttcttcgagatcaacaccttccacatcgacccgaag
gaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgaaaccctgaacttcgac
ctggccgacggcgacaaggtcatcgtcgaagccggcaagcgcatcaccgcgcgccacgtc
aagcagctcgaggcctccggcatcgccgcgctggccgtgcccgacgagtacctggtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggcgaactgctggccagcgccaac
gacgagatcagcgaagatcagctgaccgcgttccgcaaggccggcgtcgacgccgtgggc
acgctgtgggtcaacgacctggatcgcggtccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctcgaggcgctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgtgtcggccgcaaggaagtc
accggcgagtcggtgctgtacgacaagaagtacttcggcgagcgcaacgacgaggagtcc
aagcgcctggtcgccgagcacggcgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggccgcggcgtggtcgacgacatcgaccacctgggtaaccgtcgc
gtgcgctcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtccgaaggcctgaccccgcaggaactg
atcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgcg
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcatccg
acccactacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggcggtgtatgcccgcaccaaccagtacggcttcctggagacgccgtaccgt
aaggtcgtggacggccagatcaccgacgaggtcgagtacctgtcggcgatcgaagagaac
gagtacgtcatcgcccaggccaacgcgctgcacgatgccaagagccgcctgaccgagcag
ttcgtgccgtgccgctaccagggcgagtcgctgctgaagccgccggcggaagtgcacttc
atggacgtgtcgccgatgcagaccgtgtcgatcgcggccgcactggtgccgttcctggag
cacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggccgtgccgacg
ctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgcgactcg
ggcgtgaccgtgaacgcccgccgtggcggcgtgatcgagcagatcgacgccggccgcatc
gtggtcaaggtcaacgaggccgagatcggcggcggcaccgacgccggcgtcgacatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aacgtgggcgacgtgatcgcgcgcggcgacgtgctggccgacggtccctcgaccgacatc
ggcgagctggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgtggcgcgcgacaccaagctggggccggaggaaatctcc
gccgacatccccaacgtgtccgagcaggcgctgaaccgtctggacgagagcggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcc
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaggaaaac
gagatcaagcgggtcaagaaggacttcgacgaccagttccgcatcctggaaagcgcgatc
tatgcgcgtctgcgtggccagctgatcggcaaggtcgccaacggcggtccgaacctgaag
aagggcgacaccatcagcgacgcctacctggacggcctgaagaagtccgactggttcgcg
ctgcgcatgaaggacgaggacgcctccgaggcgatcgaacgcgcgcagaagcagatccag
gcgcacgagaaggagttcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggc
gacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagcccggcgacaagatggccggtcgccacggcaacaagggtgtcgtgtcgatgatc
cagccgatcgaggacatgccgtacatggccaacggcgagaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgtatgaacatcggccaggtgctggaagtgcacctgggctgg
gccgccaagggcctgggtcgcaagatccagaacatgctcgaggcccaggccaaggtcgcc
gacctgcgcaagttcctggcgcagatctacaaccacgaccagaagctgggcgaggaccgc
gtggatctggaccagttcagcgacgcggagctgctggcgctgtcgaagaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggtgccactgaggccgagatcaagcacatg
ctcgaactcgccgacctgccgatcagcggccagacccagctgtacgacggccgcaccggc
gaggcgttcgatcgccacaccacggtcggctacatgcacatgctgaagctgaaccacctg
gtcgacgacaagatgcacgcgcgctccaccggcccgtactcgctggtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggcgagcacgagatggtcgccggc
atgccggagtccttcaacgtgctggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagactga
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