Xenopus laevis (African clawed frog): 108712643
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Entry
108712643 CDS
T01010
Symbol
pdgfrb.S
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04010
MAPK signaling pathway
xla04020
Calcium signaling pathway
xla04510
Focal adhesion
xla04518
Integrin signaling
xla04540
Gap junction
xla04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108712643 (pdgfrb.S)
04020 Calcium signaling pathway
108712643 (pdgfrb.S)
09133 Signaling molecules and interaction
04518 Integrin signaling
108712643 (pdgfrb.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108712643 (pdgfrb.S)
04540 Gap junction
108712643 (pdgfrb.S)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108712643 (pdgfrb.S)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xla01001
]
108712643 (pdgfrb.S)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xla04090
]
108712643 (pdgfrb.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108712643 (pdgfrb.S)
Protein kinases [BR:
xla01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
108712643 (pdgfrb.S)
CD molecules [BR:
xla04090
]
Proteins
108712643 (pdgfrb.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_PDGFR_d4
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Herpes_gE_N
Ig_VEGFR-1-like_5th
Motif
Other DBs
NCBI-GeneID:
108712643
NCBI-ProteinID:
XP_018110448
Xenbase:
XB-GENE-17334483
UniProt:
A0A1L8GR79
A0A974D673
LinkDB
All DBs
Position
3S:16217497..16293262
Genome browser
AA seq
1074 aa
AA seq
DB search
MHLLQITALLLVTSRASSLSIIPTEGSEIVLDKYSNYSLYCFSMEEIVWEHDGQLIDSAL
EVKDGIFTRTLALFNLTGRNTGQYSCLYNDSVNLDEPGMKSVYIFVPDPSMVFLSVNESE
RFIFIIHNVENVIPCRVTDPNTNVTLHEGKEDPDIPMHYNNKRGFIGIFSDINYYCKASL
NGKEVYTEPFHVYSIHVSAINISIEAEKELVKRGENITVRCIVTYNEILNFTWDYPAKKI
GRTSTPDVIFLPNNCIGSVLTIHNADLNDSGTYSCGAVEMVFEQIDIKYIDITVIEQGFV
NLYTKESSMSYTTRHNSKLFRVNLESYPPPSIVWLKDNITLTGNQTNLITIVNKATSKNR
YTSHLSLVRVEEQDAGLYTIRVFNEDATEEKSFYLQINVPPNITELVDTHPASGGQIVTC
IAKGIPAPEITWFICTELKRCNIKELESWKLLDNKTSDLEFRTNVSYIVLEGSSSRAVKS
VLHFKGLEDSVMVRCSVKNLIEVQSREVTLTPHYLSFKIVLVSAILALVVLVLFLLIILV
VLLQKKPRYEIRWKVIESVSSDGHEYIYVDPLQLPYDSSWELPRDKLVLGRTLGSGAFGR
VVEATAHGLGHAQSVTKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLAACTK
GGPVYIITEYCRYGDLVDYLHRNKHTFLQCYADKSRKDTGVYSNASIGEELQSQSTFSTE
SDGGYMDMTKDEMCYVPMLNQKGEIKYADIETSNYGTTYELENYATSERTTDVTLINESP
ILSYTDLIGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIVKDSN
YISKGTTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNA
IKRGYRMSKPSYASEEVYEIMKKCWDEKFETRPPFSQLVTLTGNLLADTYKQKYKEVDEE
FFRSDHPAVVRVRPKLNKINSTMHAGETIANNILYSVVQPNDNNDYIIPLPDPKPEDSDN
ILNLNESSASRPSSTLQEGNTSSTISCDSPLEQPDHNLEHDPCQECQDIEESFL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgcttcagataacagctttgttattagtgacaagtagagcctctagcttgtcc
atcataccgacggagggctctgagattgtgctggataagtatagcaactactccttatat
tgtttctcaatggaagagattgtgtgggaacatgatggacaattaattgattcagcactt
gaggtcaaagatggcatcttcactcgaacacttgccctttttaatttgacggggaggaac
acagggcagtactcatgcctctacaatgattctgtcaatttggatgaaccagggatgaaa
tctgtctatatttttgtaccagacccatccatggtttttctgtcagtgaatgagagtgaa
aggttcattttcattattcacaatgttgaaaatgtcattccatgccgggtgaccgaccca
aacacaaatgtgactctacatgagggaaaggaggacccagacatccccatgcactacaac
aacaagagaggattcatagggattttcagcgatataaattactattgcaaagcatcactt
aatgggaaagaggtttacacagaaccatttcatgtctacagtatacatgtttccgcaatc
aacatttccattgaagcagagaaggagttggtaaaaagaggtgaaaatatcaccgttaga
tgcatagtcacttacaatgaaatcctgaactttacttgggattatccggccaagaagata
ggcagaacaagtaccccggatgtgatattcctgcccaataattgcataggttctgttttg
accatccacaatgctgatctgaacgattctggaacatatagttgtggcgctgtggagatg
gtatttgaacaaatagacataaaatatattgatataactgtaatagaacaaggatttgta
aatctatataccaaggaaagcagtatgtcctatactacccggcataatagcaaattattc
agagtcaaccttgagtcctatccaccaccctctattgtctggctaaaagacaacattacc
ctaacaggcaatcaaaccaacctaatcactattgtgaacaaagctacatcaaaaaacagg
tacacaagccatttatcacttgtacgagtggaagaacaagacgctggcctctacacaatc
agggtttttaatgaagacgcaactgaagagaagtcgttctacctccagataaatgtgccc
cctaatataacagagctcgtggatacccatcctgcaagtggtggtcagatagtgacatgt
atagctaaaggcatcccagccccagaaattacgtggttcatctgcactgagctgaaaagg
tgtaacattaaggaactggagtcatggaaacttcttgataacaaaacctcagacctggaa
ttccgcacaaacgtcagttacatagtgctggagggttccagttctcgcgcagtaaagagc
gtccttcatttcaaaggtctggaagattctgtcatggtccgctgttcagtcaaaaacctt
attgaagttcaaagcagagaagtcacacttacaccacactatttgtcctttaagattgtg
ctcgtatctgccatcttggcactggtagtgctcgttctatttcttcttattatccttgtc
gtcttgttgcagaagaaaccacgttatgaaatccgctggaaggtcattgaatcggtcagc
tccgatggtcatgaatatatatacgttgatcctctgcagcttccatatgattccagctgg
gagcttcctagagataagttagtgctaggtcgaacactcgggtccggtgcgtttggcaga
gtggtagaagctacagcccatggattaggccacgctcagtcagttactaaagtagctgta
aaaatgctaaaatcaactgccagaagcagtgagaagcaggctctcatgtctgagctgaag
attatgagccatcttgggccacatctcaatatcgtcaacttgctggcggcttgtaccaaa
ggcgggcctgtgtatatcataacagagtattgccggtacggagacttagttgattaccta
catcgtaacaaacatacgttccttcagtgctatgctgataaaagcagaaaggacaccgga
gtctacagtaatgcttccattggcgaagaactgcagagtcagtcgacattttccactgaa
agcgatggaggctacatggatatgaccaaggatgagatgtgttatgtgccaatgctaaac
caaaaaggagaaatcaaatatgctgatattgagacttcaaactatggtaccacatatgag
ctggagaattacgcaacatcagaaaggacaactgatgtcaccctcataaatgaatcacca
attctcagttatactgatttgattggattcagctaccaagtggccaatggaatggaattc
ctcgcctcgaaaaattgtgttcatcgtgacttggcagcaaggaatgtgttgatctgtgag
ggaaagctggttaagatttgtgactttgggctagccagagacatcgtgaaggattccaac
tacatatccaaaggaactacattcctcccattaaaatggatggcaccagagagtattttc
aacaatttatacacaacattaagtgatgtttggtcctttggaattctcctttgggaaatt
tttactttaggtggaactccatatcctgaattacccatgaatgaacagttctacaatgcc
ataaagcgtggctaccgaatgtcgaagccttcctatgcttcagaggaagtatatgaaatc
atgaaaaaatgctgggatgagaagtttgagacaagacccccattttcacagctagtgaca
cttacaggaaatcttctggctgacacctacaaacagaaatacaaagaagtggatgaggaa
ttctttagaagcgatcatcctgctgtggtgcgtgtgaggcccaagcttaacaaaatcaac
agcaccatgcatgcgggggaaactatagcaaacaatattctctattcagtggtgcaacca
aatgacaataatgattacattattccgctgccggatcccaagcctgaggattcagataac
attctaaatcttaatgagagttctgccagtcgtccaagctctaccctacaagaaggcaat
acttcgtctacgatttcctgtgacagccccttggaacagccagatcacaatttggaacat
gacccatgtcaagagtgtcaggacatagaagagagttttctgtag
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