Xenopus laevis (African clawed frog): 108718136
Help
Entry
108718136 CDS
T01010
Symbol
xrn1.S
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03008
Ribosome biogenesis in eukaryotes
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108718136 (xrn1.S)
09123 Folding, sorting and degradation
03018 RNA degradation
108718136 (xrn1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108718136 (xrn1.S)
03009 Ribosome biogenesis [BR:
xla03009
]
108718136 (xrn1.S)
03016 Transfer RNA biogenesis [BR:
xla03016
]
108718136 (xrn1.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
108718136 (xrn1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108718136 (xrn1.S)
mRNA degradation factors
5'-3' decay
5' exonucleases
108718136 (xrn1.S)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
Pre-60S particles
RNases
108718136 (xrn1.S)
Transfer RNA biogenesis [BR:
xla03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108718136 (xrn1.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108718136 (xrn1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Kri1
Motif
Other DBs
NCBI-GeneID:
108718136
NCBI-ProteinID:
XP_018121265
Xenbase:
XB-GENE-17340222
UniProt:
A0A974HI40
A0A1L8G4C4
LinkDB
All DBs
Position
5S:complement(107188569..107258021)
Genome browser
AA seq
1727 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRITEDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVEKGE
VLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVSIYLSGHETPGEGEHK
IMEFIRSQKAKPDHDSNTRHCLYGLDADLIMLGLTSHEVHFSLLREEVRFGGKKNQKRVS
APEETTFHLLHLSLMREYIDYEFSSLKDKIPFEYDVERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTLGGYINENGYLNLYNFEKYLKKLSDFDREHFNEIFVDLK
WFESKVGNKYLNEAAGQAAEEAKNLNKKKNKVADDAFCFSALENNGEENSECLDENPEDD
DDDLFETEFRQYKRTYYMSKMGVEVVSDEFLADQAKCYVQAIQWILHYYYHGVQCWSWYY
PYHYAPYLSDICNFNHLKLTFDFGKPFMPFEQLLAVLPAASKDLLPLTYQNLMISSDSPI
IDYYPQDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMASCNKCLTEDEKKRNRHSECIMY
WYEMETDFKYFSPWPEKFQSVDRCHARYKLISLDAWHVDVTDNKITNVNKSALYFCGFPT
LKHIKHKHSMKKAGVQVFQQSSRGENMILELETEENEDNQNVDIVASAVLGKSVFVNWPH
LEEARVIAVSDGEMKFYLEERPGTQKLYTGNSVPPTKVIYVGDKERNVWVKEIQGISEHY
HKRKGVVINETAIVLHAQLLTGRHYLLGQNGEVHLEKQWSKQVLSFVYQTVVQDITTFES
GSSHYKTLGELFSPKSSVFMLGAPYYGCMGEVQESSDVLSENRIRVILSIPCEPQLLALI
QNQHTFSIKYNPGYVLASRLGVNGYLVSRFTGSIFIGRGSKKNPHGEQKSNVGLNLKFNK
KNEEVPGYTKRVGTEWTYSSAAELLLGEYIERFPELFSYISKHSQNDVFYEDDIWAGEDE
NGAEKVEEIVSWLKSHPVNTLSHSSCDLQILDADIVEKIEEEVAKCESKKPSKVRVTVKP
HLLFKPLEQQHGVVPDQDAEFRLFDRVVNVRENFSVPLGLRGTIIGIKGAERDADVLLEV
LFDEIFSGGLTIRCAQFKAYRLPTSALINLSHGNRMESGGLKLTAVVKPHVSEKEQIGGL
NHSPRSLFVPTKVNGKQHSQGQANSPQKGFASAGNQKQKDDEHFNVWQSLQGSEKSPHAQ
NAHGKGVYLPQDKKPGPSNQFHKSEMAGSSPKCQSKRQDPIRKMKEDFKFQKHESQMQGV
FNKRNTSDSVKQVKLLKRNDNLSEAQTEKVNPKAPDGKSNSEFENLIASLKVADEEQTQP
APQTQDSSVEHLSPQSFAMKGTQMLKEILKIDSPDSTDQHKEGVKKDIVTAQPQRRQTKQ
IAAHMNSPQGTGPALNTPNPEFLRAPLIPQPPAMATPASELSRICSLVGMHPPTFSFLRT
PQALTACQVKLSNGLIIAGPPCHTENEAKEKAALFALQRLSSLSFPLPPPPAIFPTYAHF
GAALPTRQIPPVFPPAAANMISAAPHVFAPVTWRPPIQISKPYYPGPYASNTPVVGHMPA
GTHNQFVPLQVTKQRAAFHKNTEHKDPINTSNVSSDQEQRLVPEASNQDTQENASPSLAS
PQPAQSTLTEKASHSPVASHSKTTPGSAGKRKPRKLAVNFSGPKASE
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaaattttaccgctggatctccgaaaggtacccgtgccttagtgaggtg
gtcaaggaacaccagattcctgaattcgacaatttgtacttggacatgaatggcatcatc
caccagtgctcacacccaaatgatgaagatgtgcactttcgcataacagaagataagatt
tttgcagacatatttcattacctggaggtgctgtttcgcatcatcaagccaaggaaagtg
tttttcatggcagtggatggtgtggcccctagggcaaaaatgaaccaacaacgggggaga
cgtttcagatcagcaaaagaggcagaggacaaaataaaaaaggctgtagaaaaaggagaa
gtcttgccaacagaagccagatttgattctaactgtattacccctggaactgaatttatg
gctcgcttgcatgagcatttgaagtattttgtaaatatgaagatttccacagacaagtct
tggcagggagtctccatctacttatctggccatgagactccaggggaaggagaacataaa
ataatggaatttatccgatctcaaaaagcgaagccagatcatgattcaaacacaaggcac
tgtctttatggattagatgctgatttgataatgcttggtttaacaagccatgaagttcac
ttctctcttttaagagaagaggttcgctttggtggaaagaagaatcaaaaaagggtttct
gcaccagaagaaactacatttcatcttcttcacttgtctttaatgagagagtatattgat
tatgaattttcctcattgaaagacaagattccatttgaatatgatgtagagcgaataatt
gatgattggattttaatgggatttcttgtaggcaatgattttattcctcatctacctcat
ttacatatcaatcatgatgcactgcctcttttgtatagaacatatattagtgtcttacct
actcttgggggttacataaatgaaaatggttatttaaacctatataattttgagaagtac
ctaaaaaaactttcagattttgatcgggagcatttcaatgaaatctttgttgacttaaaa
tggtttgaaagcaaagtgggcaataaatacctcaatgaagctgcaggccaagctgctgaa
gaagccaaaaacctgaataaaaagaaaaacaaggttgccgatgatgccttttgttttagt
gcattagagaataatggggaagaaaattctgaatgtttagatgagaaccctgaagatgat
gatgatgatctctttgagacagaattcagacaatacaagaggacatactacatgtcaaag
atgggagttgaagttgtttcagatgaatttctggcagatcaggctaaatgctatgtccag
gcaatacaatggattttgcactattactaccatggagtccagtgctggagctggtactac
ccctatcattatgcaccatacctgtcggatatttgtaatttcaaccaccttaagctgaca
tttgattttggtaaacccttcatgccatttgagcagctgcttgcagtccttcctgctgct
agtaaggatttattgcctctcacttatcagaatctgatgatcagttcagattctccaatc
atagattattacccgcaagattttaaaactgatctaaatgggaagcagcaggagtgggaa
gctgttgtactaattcctttcatagatgagaaacgattgctggaagctatggcatcctgc
aataagtgtctgactgaggatgagaagaaaaggaaccgacacagtgagtgcataatgtac
tggtatgaaatggaaactgatttcaaatacttttcaccgtggccagagaaatttcagagt
gttgatcgctgccatgcaaggtataaactaatttctttggatgcctggcatgtagatgtg
actgataataaaataacaaatgtaaataagagtgcattgtatttctgtggatttcctact
ctgaagcatattaaacataagcattccatgaagaaggcaggtgttcaggtattccagcaa
agcagccgaggtgagaacatgatcttggagctagagactgaagaaaacgaagataaccaa
aatgtggacattgttgccagtgcagtactcggaaaatctgtatttgtaaattggcctcac
ctggaagaagccagagtcattgctgtttcagatggagagatgaagttttatttagaagaa
cgccctggaacacaaaagctttacactggtaactcagtaccaccgactaaagtaatctat
gttggcgataaagaaagaaacgtatgggtgaaagaaattcagggaatatccgaacattac
cacaaaagaaaaggagtggtgataaatgagactgcaatagttttgcatgcacagctgctc
actggccgccactatctgttgggacaaaatggggaggttcatctcgagaagcagtggtcc
aaacaagtgctgtcctttgtgtaccagactgttgttcaggatatcactacttttgaatct
ggctcatctcattacaaaacactgggcgagcttttctctcctaaaagttctgtcttcatg
ttgggggcgccctactatggatgcatgggagaagtacaagagtcatctgatgttctcagt
gagaacagaatccgtgtgattttatctattccctgtgaaccacagctacttgccttaata
cagaaccagcatacattttctataaaatataaccctggctatgttttggctagtcgtctt
ggtgtgaatggatacctcgtttctaggtttacagggagtatcttcattggcagaggatcc
aagaagaatccccatggagaacaaaagtccaatgtgggactgaaccttaagttcaataag
aagaacgaggaagttcctggctacactaaaagagttgggacagaatggacatattcttct
gctgctgagctccttcttggtgaatacatagagaggttccctgaattattctcatatata
tcgaagcacagccaaaatgatgtgttctatgaagatgatatttgggcaggagaggatgag
aatggtgctgagaaggttgaagagattgtgtcctggctgaagtctcatcctgttaacaca
ctatcccattcatcgtgtgatttgcaaatactggatgctgatatagtagagaagattgaa
gaggaggttgcaaagtgcgagtcaaaaaaacccagtaaagtacgagtgacggttaagcct
catttattgtttaagcctcttgagcagcagcatggagttgttccagaccaagatgcagaa
ttccgtctgtttgatcgtgttgttaatgtccgggagaacttttctgtcccactaggactc
cgaggcactattataggaattaaaggagctgaaagagatgctgatgtgctgcttgaagta
ctgtttgatgaaatattttctgggggcttaacaataagatgtgcccaatttaaagcatat
cgcttaccaacaagtgccttaatcaacctttctcatggtaatcgtatggaaagcggagga
ctgaaactgactgctgtagttaagccacatgtttctgaaaaagaacaaataggaggcctc
aaccattctccccgttctctctttgttcctacaaaggtgaatggaaagcagcattctcag
ggtcaggccaactcaccacagaaaggttttgcttctgctggaaatcagaaacaaaaggat
gatgagcatttcaatgtgtggcaatcactgcaaggctctgagaaatcacctcatgctcaa
aatgcgcatggcaagggtgtttatctacctcaggataagaagccaggccccagtaatcaa
ttccataaatcagaaatggctgggagcagcccaaaatgtcagtccaaaagacaagatcca
attagaaaaatgaaagaagatttcaagtttcaaaagcatgagagccaaatgcagggtgtg
tttaataaacggaatacatcagattctgtgaagcaagtaaaacttttgaagcgaaatgac
aatctctctgaggctcagactgagaaagttaatcccaaggcaccagatggaaagtctaat
agtgagtttgaaaatttaatcgcatccctgaaggttgcagatgaagagcagacacagcct
gcaccccaaacccaagactctagtgtggaacacttgtcccctcagtcttttgccatgaaa
ggaactcaaatgttaaaagaaatactcaagattgacagcccagactctacagaccagcac
aaagaaggagttaaaaaggatattgtcactgcacagcctcagcgcagacaaaccaaacag
atagctgcacacatgaacagtcctcagggaactggcccagctttaaacacacccaaccca
gaatttctacgggcacctctgattccacagccacctgccatggctactccagcgtctgaa
ctttcccgtatctgtagtttggttggcatgcatccacccacgttctccttcctgcgaacc
ccacaggctctgaccgcttgtcaagtgaagctgtcaaatggtttaatcatagctgggccc
ccttgtcatacagaaaatgaagccaaggagaaagctgctttatttgcacttcagagactg
agctcactcagtttcccattaccaccgccaccagcaatatttccaacctatgcgcatttt
ggagctgctttacctaccagacagatacccccagtctttccacctgcagcagctaatatg
atctctgcagcaccacacgtatttgctcccgtaacatggagacctccgatacaaatctct
aaaccttactacccaggcccttatgctagcaatacacccgtagtgggtcacatgccagca
ggcactcacaaccagtttgtaccactccaggtaacaaagcaaagggctgctttccataag
aacactgaacacaaggatccaataaatacatccaatgtatcttcagaccaagagcagaga
ttagttccagaagcgagcaaccaggacacccaagaaaatgcatctccatctctggcatct
cctcaacctgcccagtcaaccttaacagaaaaggcttcacatagtcctgttgcaagtcac
agcaaaaccactccagggtccgctggcaaaaggaaaccacggaaattagccgtcaatttc
agtggccctaaagcatcagaataa
DBGET
integrated database retrieval system
