Xenopus laevis (African clawed frog): 432312
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Entry
432312 CDS
T01010
Symbol
prpf38a.S, prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
432312 (prpf38a.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
432312 (prpf38a.S)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
432312 (prpf38a.S)
Complex C
U4/U6.U5 tri-SnRNP related factors
432312 (prpf38a.S)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
432312
NCBI-ProteinID:
NP_001085218
Xenbase:
XB-GENE-980002
UniProt:
Q4FZQ6
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Position
4S:76679088..76688653
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AA seq
312 aa
AA seq
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MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL
EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR
VSALEEDMDDVESSEEEEDDDEKGRDPSPEHHRRNYRDLDRPRRSPSPRYRRSRSRSPRR
RSRSPKRRSPSPPRRERHRSKSPRRHRSRSRERRHRSKSKSPGHHRSHRHRSHSKSPERS
KKSHKKSRRGNE
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgaactgtgaaagacgcgcatagtgtgcacgggactaacccacagtacctg
gtggagaaaattatcaggactcgcatatatgaatcgaagtattggaaggaagaatgtttc
gggctgacagctgagttggtggttgataaggcaatggaacttaaatttgtcggaggtgtt
tatggtggaaacataaaaccaacccctttcctctgcttgaccttgaaaatgcttcagatc
cagccagaaaaagacatcattgtggaattcataaagaatgaagatttcaagtacgttcga
gctttgggtgccctgtacatgcgattaactggcactgccactgactgctacaaatacttg
gagcctctgtataatgactacagaaaagttaaagttcagaacagggatggagaatttgaa
ttgatgcatgtggatgagttcatagatcaactactacatgaggagcgtgtctgtgatgtc
atattaccacggttacagaaacgctttgttctggaagaaacagaacagttggatccacga
gtcagtgcattggaagaagacatggatgatgtggaatccagtgaagaggaagaggacgat
gatgaaaagggtagagatccctctcctgaacatcacagaagaaattacagagaccttgac
aggccacgtagatctccttctccccgttatagaagaagtcgcagccgttcaccaagaaga
cgcagtcgctctcctaaaagaagaagtccttctccacctcgtcgggaaagacataggagc
aaaagcccaagacgtcatcgcagtaggtctagagagagacgacaccgctcaaaatccaaa
tctccaggacatcatcgaagtcacagacacagaagtcactccaagtcacctgagaggtca
aagaaaagtcacaagaagagcagaagagggaatgagtaa
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