KEGG   Xenopus laevis (African clawed frog): 432312
Entry
432312            CDS       T01010                                 
Symbol
prpf38a.S, prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    432312 (prpf38a.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    432312 (prpf38a.S)
Spliceosome [BR:xla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    432312 (prpf38a.S)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    432312 (prpf38a.S)
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 432312
NCBI-ProteinID: NP_001085218
Xenbase: XB-GENE-980002
UniProt: Q4FZQ6
LinkDB
Position
4S:76679088..76688653
AA seq 312 aa
MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL
EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR
VSALEEDMDDVESSEEEEDDDEKGRDPSPEHHRRNYRDLDRPRRSPSPRYRRSRSRSPRR
RSRSPKRRSPSPPRRERHRSKSPRRHRSRSRERRHRSKSKSPGHHRSHRHRSHSKSPERS
KKSHKKSRRGNE
NT seq 939 nt   +upstreamnt  +downstreamnt
atggcgaatcgaactgtgaaagacgcgcatagtgtgcacgggactaacccacagtacctg
gtggagaaaattatcaggactcgcatatatgaatcgaagtattggaaggaagaatgtttc
gggctgacagctgagttggtggttgataaggcaatggaacttaaatttgtcggaggtgtt
tatggtggaaacataaaaccaacccctttcctctgcttgaccttgaaaatgcttcagatc
cagccagaaaaagacatcattgtggaattcataaagaatgaagatttcaagtacgttcga
gctttgggtgccctgtacatgcgattaactggcactgccactgactgctacaaatacttg
gagcctctgtataatgactacagaaaagttaaagttcagaacagggatggagaatttgaa
ttgatgcatgtggatgagttcatagatcaactactacatgaggagcgtgtctgtgatgtc
atattaccacggttacagaaacgctttgttctggaagaaacagaacagttggatccacga
gtcagtgcattggaagaagacatggatgatgtggaatccagtgaagaggaagaggacgat
gatgaaaagggtagagatccctctcctgaacatcacagaagaaattacagagaccttgac
aggccacgtagatctccttctccccgttatagaagaagtcgcagccgttcaccaagaaga
cgcagtcgctctcctaaaagaagaagtccttctccacctcgtcgggaaagacataggagc
aaaagcccaagacgtcatcgcagtaggtctagagagagacgacaccgctcaaaatccaaa
tctccaggacatcatcgaagtcacagacacagaagtcactccaagtcacctgagaggtca
aagaaaagtcacaagaagagcagaagagggaatgagtaa

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