Xiphophorus maculatus (southern platyfish): 102228947
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Entry
102228947 CDS
T02923
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X7
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102228947 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102228947 (cnot1)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102228947 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102228947 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102228947
NCBI-ProteinID:
XP_014327624
Ensembl:
ENSXMAG00000006031
LinkDB
All DBs
Position
2:complement(3222782..3253188)
Genome browser
AA seq
2389 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDTLTGISAL
SLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPTTPFGVHSSISSQLPGMD
SAIGSSIGSSIGSSIGSSLGMPSVSSDPFVTRKMSTPVLNPPTFQQTDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSVALAHA
QAQSQQPPNLKAPQPGQPSTLATTTTTTTTTAAKTGTISRPTQSTFKKDMPPSINTTNID
TLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVM
KRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLG
HWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQN
PWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKNLEEQL
SAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGPPTPQFSYHDINVYALA
GLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDF
ALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMM
EEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTY
QAERMPEQIRLKVGGVDSKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDD
VAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARNSRDGIAALGLLQKAVE
GLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEA
VELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFQT
IEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPG
LREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCV
EISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVL
GIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILR
PTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKP
MQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFT
PNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPG
NRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFL
NAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgcccacctgtttactcaactgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcccgaccttctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggcttccaagacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gagcagattgacgccttccttaagacactttgccgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactccggggagttagctaagaccatcatggagagttctcttgcagacttcattcag
gaagttggttacggcttttgtgccagtcttgatgaatgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtagccagagttctgggaatgatggcccggacg
cactccggcctgtctgacggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgacggctcgcaggcacatacgtggaatgttgaggtt
ctcattgacattgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctggaccaccccggatttctgatccgggacagcaagggcctgcagatcgtggtgtacggg
atccagcgggggttgggaatggaggtcttccctgttgatctcatttaccgctcatggaaa
cacgcagagggacagctgtcgtttattcagtactctctgatgaacccagaagtgttctgc
tttgctgactacccatgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtctcctcagactc
tctgagcttgggcaatacgaacaggtgaagcagctcttcagcttccccatcaagcactgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttacgccat
gagctcatttccactctcatgcccatctttcttggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctgattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaaactgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggagaaccgttcatccaggcatgtgttacgtttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccggagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacaatcctcaccatggttgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacagatggacactctgactggcataagcgccttg
agtctgggcagcaccgccacctcccacactcaaagcatgcagtgcttcgccacctcactg
agctcggctctcagtaaccctctgtccccctcaaaggccttccctcctcttccaaacccg
aacccaaccacaccttttggggttcatagcagtatcagttcccagcttcctggtatggac
tctgccatcggctccagcatcggctccagcattggctccagcatcggctccagcctggga
atgccgtcagtcagctcggatcccttcgtcaccaggaagatgagcacacctgtcctgaac
cctcctacctttcagcagactgatctttctcaggtgtggccagaggctaaccagcacttt
agtaaggagatcgacgacgaagcaaacagttacttccagcgtatctacaaccacccacct
cacccgaccatgtctgtggacgaagttctggagatgctacagaggtttaaggactcgacc
atcaagcgagaacgagaggtgttcaactgcatgcttcgaaacttatttgaggaataccga
ttcttccctcagtacccggacaaagaactgcacatcactgcctgcctctttggtggcatc
attgagaagggtctggtcacctacatggcgctgggtctggccctgcgatacgttctcgaa
gctttacggaaaccattcggatccaaaatgtattactttggaattgctgcactggataga
ttcaaaaacagacttaaagactaccctcagtactgtcaacacttggcttcaattgctcac
tttttgcagtttccacaccatttacaagagtatatcgagtatggccaacagtcacgtgac
cctccggtgaagatgcagggatccatcactacacctggaagcgtcgccctggcccacgct
caggctcagtcccagcagccgcccaacctcaaagccccccagccgggccagcccagtaca
ctggctaccaccaccaccaccaccacgaccactgcagccaaaacaggcaccatctcaagg
cccacgcagagcaccttcaagaaggatatgcctccttccataaacactaccaacatcgac
acacttctggtagcgacggatcaaaccgaacggattgtagaacctccagagaatgtccaa
gagaagattgctttcatcttcaacaacctttctcagtccaacatgacacagaaggtagag
gagttgaaggaaacggtgaaggaagagtttatgccgtgggtgtctcagtacctagtgatg
aagcgcgttagcattgagccaaactttcacagtctctattccaactttttggacacattg
aagaacccggagtttgtcaagatggttctcaatgaaacttacaggaatatcaaggtgctt
ctaacctctgacaaagcagctgctaacttctccgatcgctccctgctcaagaaccttggc
cactggttgggcatgatcactctggccaaaaacaagccaatcctctacacagacctggag
ctcaaatctctcttgctagaagcctatgtgaaaggccagcaggagctcctctatgtggtt
ccctttgtggccaaagtcttggagtctagcctacggagcatggtcttcaggcctcagaac
ccttggactatggccatcatgaatgttctcgctgagctccatcaggaacatgacctcaag
ttgaatttgaagtttgagattgaagttctgtgcaagaacttgtctctggacatcaacgag
ctgaagccagggaacctgctgaaggacaaagagaagctgaagaacctcgaggagcagctg
tctgcaccaaagaaagaagcgaagcctccagacgaaatcctgccacctcctaccacaggt
gactttgttccgtttccagctccttccacaaccccagctgccaccaccaccacctgcacc
accaccgggccgcccacgcctcagttcagttaccatgacatcaatgtctacgccctggca
ggcctggctccacatatcaacattaatgtcaacatcgctctgctgcaggctcatcctcag
ctcaaacagtgcgtgcgtcagtctgtggagcgagcggtccaggagctggtgcaccccgtg
gtggaccgttccatcaaaatagccatgacaacatgtgagcagatcatcaggaaggacttt
gccctggattcggaggagtctcgcatgcgcgtagccgcccaccacatgatgagaaacctg
accgctggcatggccatgatcacctgccgcgagccgctgctgatgagcatcgccaccaat
ctgaagaacagctttgctgcggcgctcagggcaccaacgccacagcagagagaaatgatg
gaggaggctgcagccaggattgctcaggataactgtgaactggcctgttgcttcatccag
aaaactgctgtggagaaagctggacctgaaatggacaagcggctggccacagagtttgag
ctgaggaagcacgcacggcaggaaggccgtcgctactgtgaccccgtcgtcctaacctac
caggctgagcgcatgccggaacagatcagactcaaggtgggaggagtggactctaaacag
ctggctgtttatgaagagtttgcgaggaacattcccggtttcttacccagcaacgatctc
tcccaacccactggcttcctggctcaacccatgaagcaacaagcctgggccactgacgac
gtggctcagatctacgataaatgcatcacagacttggagcagcaccttcatgccattcct
ccagcgctcgccatgaacccgctgacccagggtctgcggaacctgctggaagccgtggct
ttggcgcgaaactccagggatggcattgctgcccttggcctcctgcagaaggccgttgaa
ggtctcctggacgccaccagtggtgctgatgctgacctgctgcttcgctacagagagtgc
cacctgctggtgctgaaagctctgcaggatggacgggcctacggaccgcagtggtgcaat
aagcagattaccaggtgtctgattgaatgtcgggatgaatacaagtataacgtggaagca
gtggagcttctgatcaggaaccatctggtgaacatgcagcagtacgatgtgcacctggcg
cagtcgatggaaaatggactccactacatggcggtcgcattcgccatgcagctggtgaag
ctgctgctggtggacgagcgcagcgtgagccacgtcaccgaggcagacctcttccagacc
atcgagattctgatgagaacctgcgcacactccagagccaacgcaccagaggggcttccc
cagctgatggatgtcgttcgctccaattacgaagccatgattgaccgagcacacggaggg
cccaacttcatgatgcactctgggatttcccaagcttccgaatacgatgatcctccaggt
ctgagggagaaggcagagtacttgctgagagagtgggtcaacctgtatcactcagctgca
gctggcagggacagcaccaaagctttctctgccttcgtcggccagatgcaccagcagggc
atactgaagaccgacgacctgataacgcggttcttccggctgtgcacagaaatgtgcgtg
gagatcagctatcgtgcacaggctgaacagcagcacaacccagcagctagcgtagccatc
atcagagccaaatgttaccacaacctggatgccttcgtccggctcatagccctgctagtg
aagcactctggagaggccaccaacaccgtgacaaagatcaatctgctcaacaaggtcctg
gggattgttgtcggagtgctgatccaggaccacgatgtccgtcacacagacttccagcag
ctgccgtaccatcgcatttttatcatgctgctgttggagctcaatgcgcccgaacacgtc
ctggagaccatcaacttccagacactcactgccttctgcaacacgttccacatcctgaga
cccaccaaagctcccggcttcgtgtacgcctggctggaactgatctcccatcgcatcttc
attgccaggatgctggcgcacactccccagcagaagggttggcccatgtacgcacagctg
ctgattgacctctttaagtatctggctcccttcctgaggaacgtagagctcaacaaacct
atgcaaatcctctacaagggcacactgagggtgcttctggtcctgttgcatgatttccca
gagttcctctgtgattaccattatggcttctgtgatgttatcccacccaactgcatccag
ctccgcaaccttatcctcagtgccttcccacgcaacatgaggcttccggatcccttcaca
cccaacctaaaggtggacatgctgagcgagataaacatcgctccccgtatcctcaccaac
ttcacaggcgtcatgccgtctcagttcaagaaggatctggactcctacctgaagactcgc
tcacctgtgactttcctgtctgagcttcgcagcaacttgcaggtgtcgaatgagccagga
aaccgctacaacatccagctgatcaacgcgttagtgttgtatgtcggcacacaggccatc
gctcacatccacaacaagggcagcaccccgtccatgagcaccatcacacactctgcacac
atggacatcttccagaacctggctgtggacctggacactgaagggcgatacttgttcctg
aacgcgatagccaatcagctgcgctacccaaacagccacacccactacttcagctgcacc
atgctctacctgtttgctgaggccaacaccgaggccattcaggagcaaatcaccagggtt
ctgcttgagaggctgatcgtcaacagacctcacccctggggactcctcatcaccttcatc
gagctgatcaagaatcctgccttcaagttctggagtcacgactttgttcactgtgcacct
gagatcgaaaagttgttccagtccgtggctcagtgctgcatggggcagaagcaggcccag
caggtgatggagggcaccggtgccagctaa
DBGET
integrated database retrieval system
