Xiphophorus maculatus (southern platyfish): 102229172
Help
Entry
102229172 CDS
T02923
Symbol
col9a1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102229172 (col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102229172 (col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102229172 (col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xma00535
]
102229172 (col9a1)
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Others
102229172 (col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102229172
NCBI-ProteinID:
XP_005807697
Ensembl:
ENSXMAG00000009528
LinkDB
All DBs
Position
22:11342520..11366511
Genome browser
AA seq
679 aa
AA seq
DB search
MAGFAGINGSFLVVILQLVLLCFSQRNQGPPGPPGPPGVPGVDGIAGERGLDGQDGFPGP
DGDAGKPGSSGLPGIPGNDGLAGPVGDPGPDGPPGQKGEPGKSGPRGAAGVGPDGSPGPP
GPGGLLGELGKVGALGAMGVRGPQGPRGPSGPRGAAGMLGTSDLCPNSCPPGTPGHPGLP
GMKGHKGAKGEAGEPGKQGHKGEEGDQGGPGDVGSQGPTGPQGIRGATGMMGPKGQIGAR
GPDGDSGPQGVAGATGDRGQRGVMGEPGIKGEMGVLGPRGITGLPGPKGEAGLPGVEGRD
GIPGLPGAKGNIGKPGVPGEIGLQGLPGLPGTPGPKGLSGPKGDSGKPGFPGTLGSAGKQ
GERGEQGEVGPIGPIGEPGDPGEQGPVGPAGKPGARGPKGDPGLPGLPGPPGLPGVKGEK
GERGEAGPKGEQGAQGDEGNPGERGELGDAGESGSKGEAGISGEPGKRGPEGSRGQPGIE
GPPGTPGPRGMQGNRGPRGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GIAGLPGKPGPPGPPGPSGDNGFPGQAGARGLPGLKGPPGAMGNKGPKGDMGDRGSRGPT
VRGPKGQPGPPGLPGEPGKPGYGQDGQDGQRGPPGVPGQTGVPGPPGPAGLNGYCDPSAC
NLQAGAVQQSLDVKGPTGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctgggtttgcaggcattaacgggtcttttctggtggtgatcctgcagcttgttctc
ctttgcttctctcaaaggaatcaagggccccctggcccacctggacccccaggagtccca
ggagtcgatggcatagctggtgaacgggggttagatggccaggacggttttcctggccct
gacggggatgcaggtaaacccggttcttcaggattacccggaattcctggaaatgatggt
ttggccggccctgttggagaccctgggcctgatggtcccccgggacagaaaggtgaacct
ggaaagtccggacctcgtggagctgctggtgtcgggcctgatggatcccctggaccacct
gggcctggaggacttctgggtgaattgggaaaagttggagctcttggagcaatgggtgtg
agagggccacaaggaccccgtggaccatcagggcccagaggtgcagctgggatgcttggt
acttccgacctgtgtccaaactcttgtccacctggtaccccagggcatcctggtctacct
ggtatgaagggtcacaaaggtgcgaaaggtgaagcaggagaacctgggaaacagggacac
aagggtgaggaaggagaccagggaggtccaggagatgttggatcccagggtccaacggga
ccacagggaatacgtggagccacgggaatgatgggccccaagggacagataggagctcga
ggtcctgatggagattcaggtccacagggagttgcgggggccactggagacaggggtcaa
agaggagtaatgggggaacctgggattaaaggtgaaatgggtgttttagggccacggggg
atcacagggcttccaggtccaaaaggagaagctggattacccggtgttgaaggccgtgat
ggcattcctgggttgccgggtgcaaagggaaacatcggcaagccaggagttcctggagag
attggacttcaggggcttcctggtttgcctggaacacctggaccaaaaggcttgagtggc
ccaaagggagattctgggaagcctgggtttcctgggacattgggatctgctggaaaacaa
ggtgaaaggggagaacagggagaagtgggacccatcggacccatcggggagcctggagat
cctggagagcaaggtcctgtaggtccagctggcaagccaggtgcaagggggccaaaaggt
gaccctggtcttcctggtctcccagggcccccaggcctgcctggagtgaagggagaaaag
ggtgagcgtggagaagcaggacccaaaggagaacaaggggctcaaggtgatgagggaaat
cctggagagagaggggaacttggagatgctggggaatctggatcaaaaggagaggctggt
atttctggtgaacctggcaaaaggggtcctgagggaagccgaggccagcctggcatcgag
ggccctcctggcacacctggaccacgaggcatgcaggggaacagaggtccacgtggggtc
cgggggtctcaggggcctgcgggcaaggagccaagcgatcagcacatcaagcaagtctgc
atgcgagttatgcaagagcagctggctcagttagctgctagtctaaggaggccagagtct
ggcattgcaggtttaccaggaaaacctggccctcctgggcctccaggaccctcaggagac
aacggttttccagggcaagctggagcaaggggccttccaggactcaaaggaccaccaggg
gcaatgggaaataaaggtcccaaaggtgacatgggagatagaggttccagagggcccact
gtacgaggacctaaaggccagccaggacctcctgggcttccaggagagccagggaaacct
gggtatggtcaagatggtcaggatgggcagaggggacctcctggcgtgccaggacagact
ggcgtgcctggtcctcctggtccagctggcctgaacggctattgtgacccgtcagcttgc
aacctccaggcaggggctgtccagcagtctctggatgtgaagggacctacagggaactaa
DBGET
integrated database retrieval system
