Xiphophorus maculatus (southern platyfish): 102230159
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Entry
102230159 CDS
T02923
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102230159 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102230159 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102230159 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xma00535
]
102230159 (col9a3)
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Others
102230159 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102230159
NCBI-ProteinID:
XP_005812979
Ensembl:
ENSXMAG00000009969
LinkDB
All DBs
Position
1:21981202..21998403
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AA seq
675 aa
AA seq
DB search
MTVFSALWVLFLCQLLWSSSAQRTGPRGTQGPPGQPGRDGTDGKPGPPGLPGKAGPKGKA
GIPGGPGKSGLPGLPGIDGLTGPDGPAGRDGPPGEAGEAGPPGPPGPPGRGRPGAPGLPG
TNGLPGVVGPQGAAGSEGLPGLPGPSGPDGPPGLPGSLQDLNGDLLCPAICPPGPPGPPG
MPGFKGHTGHKGDKGEPGKNGEKGDSGPPGQPGVPGTVGLQGPRGLRGLQGSMGSAGDRG
FPGFRGKPGIAGIIGKTGDVGEKGPQGFKGPKGEIGKIGPKGAVGGAGPKGEPGTPGRDG
KDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLPGKVGAKGSKGQIGDPGKNGEQGPSGEPG
IPGEIGVPGNRGIEGPRGVAGGIGPVGNSGPLGVKGFQGVKGALGDPGLPGPTGLRGEFG
DRGPVGASGAKGDIGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQGEIG
ARGPPGKPGLMGFQGEQGLPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANLRRP
LAPGTVGRPGPAGPPGKQGVAGSVGHPGTRGPPGYRGLPGELGDPGPRGDVGEAGDKGPV
GKAIDGPPGDQGHQGLPGVRGIVKDGRDGSPGDPGEPGESGRAGRTGHQGPPGICDTTAC
QGTSPAGKSSNPKNN
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttctcagctctttgggtgctcttcctgtgccagctgctgtggtcctcctca
gcccagaggactggccccagaggaacccaaggaccgccaggacaaccaggaagggacggc
actgatgggaaaccaggacctcctgggttgccagggaaagctggcccaaaagggaaagca
ggaataccaggaggaccaggaaaatcaggtctgccaggacttccaggaattgatggcttg
accggtcctgatggtcctgctggcagagacggacccccaggggaagcaggtgaagctgga
cctccggggccacctggacctcctggcagggggagaccaggagccccaggattacctggg
accaatgggttgccgggcgtagtcggacctcagggagcagcaggttcagagggtcttcca
ggacttccaggaccttctggccctgatggacccccggggcttcctggctctcttcaagat
cttaatggtgaccttctgtgtcctgctatctgtcctcctggtccccccggcccacccggg
atgccaggatttaagggacacactggacacaaaggagacaaaggagagcccggaaaaaat
ggagagaagggggattctggtccaccgggacagccgggtgttccaggaactgttggtctg
cagggccctcgtggtctgaggggtctacagggctcaatgggatctgcaggggacagaggc
ttcccgggtttcagaggcaaacctggcatagctggaatcatcggcaagacaggcgacgtt
ggggagaaaggaccgcaggggttcaagggacctaaaggagagattggcaaaattggtccc
aaaggagcagtgggtggagcaggacccaaaggggagcctggtacacctggacgagatggg
aaagatggaacgccggggttagatggcgagaagggtgatcctggacgccatggagtagtt
ggagagaaaggaccaaatggacttcctggtttgcctggaaaagttggagctaaggggtca
aaaggacaaatcggtgatccagggaagaatggggagcaaggaccctctggcgagccaggt
attcctggtgaaattggcgttccaggaaacagggggatagaaggtcccagaggagtggct
ggaggtatcggaccagtaggcaattctgggcctctgggagtaaaaggcttccagggagtc
aaaggagccttgggcgacccaggccttccagggccaacaggactccgtggggagtttggt
gacagaggtccagttggagcttctggagcaaagggagacataggcgtggcaggaagtgat
ggtttaccgggagagaatggagaacctggtccgtttgggccagttggacagaaaggagag
tcaggaaagagaggtgaactggggcctaaaggtgtgacaggtccacaaggtgagatcggg
gccagggggcctccaggaaaaccaggactgatgggcttccaaggggaacagggtctgcca
ggaatcgcaggaaagaccggcgtacctggtaaattagcaagtgagcagcacatcagagag
ctgtgtggttccatgatcgatgaccagattgcacagctagcggccaacctgcggaggccc
ttggccccaggaacagtgggccggcccggccccgcgggtcctccaggaaagcaaggggtt
gctggttcggtcgggcatccagggacccgtggaccgccaggatacagaggtctgccagga
gaacttggcgatccaggtcccagaggtgatgttggtgaagcaggtgataagggacctgtt
ggtaaagccattgatgggcctcctggagaccaaggacaccaaggtcttcctggagtacgt
gggattgtcaaagatggccgtgatgggtctcctggagatccgggtgagcctggagagtct
ggcagggcaggtaggactgggcatcagggtcctccagggatctgtgatacaacagcctgc
cagggaacgtcaccagctgggaaatcctcaaaccccaaaaacaattaa
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