Xanthomonas medicagonis: AB3X07_17920
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Entry
AB3X07_17920 CDS
T10867
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB3X07_17920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xmd03021
]
AB3X07_17920 (rpoB)
03400 DNA repair and recombination proteins [BR:
xmd03400
]
AB3X07_17920 (rpoB)
Enzymes [BR:
xmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB3X07_17920 (rpoB)
Transcription machinery [BR:
xmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB3X07_17920 (rpoB)
DNA repair and recombination proteins [BR:
xmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB3X07_17920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XEB08675
LinkDB
All DBs
Position
complement(4247379..4251530)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENTDPNKRSDHGLHAALKS
VFPISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLSEFFEINTFHIDPK
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDEYLVG
RILSHDVVDAATGELLASANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
TGESVLYDKKYFGERNDEESKRLVAEHADSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGQITDEVEYLSAIEENEYVIAQANALHDAKSRLTEQ
FVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILESAIYARLRGQLIGKVANGGPNLK
KGDTITDAYLDGLKKSDWFALRMKDEEPSDAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSMIQPIEDMPYMANGETVDIVLN
PLGVPSRMNIGQVLEVHLGWAAKGLGRKIQNMLEAQAKVADLRKFLTQIYNHDQKLGEDR
VDLDQFSDAELLALSKNLTDGVPMATPVFDGATEAEIKHMLELADLPISGQTQLYDGRTG
EAFDRHTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LED
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaagaagcgtatccgcaaggacttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgctcgccatccaggtggattcctaccgcgagttcctg
caggagaacaccgacccgaacaagcgttcggaccacggcctgcacgcggccctgaaatcg
gtgttcccgatctccagctacagcggcaacgcggccctggagtacgtcggctacaagctc
ggcgaaccggtgttcgacgagcgtgaatgccgccagcgcggcatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcctcgaccaaggcgatcaag
tacgtcaaggagcaggaggtctacctcggcgaaatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgcggcaagacccacagttcgggcaagctgctgtacagcgcccgc
atcattccgtaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgctcggctac
tcgaacgaggagatgctctcggagttcttcgagatcaacaccttccacatcgacccgaag
gaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgagaccctgaacttcgat
ctggccgatggcgacaaggtcatcgtcgaagccggcaagcgcatcaccgcgcgccacgtc
aagcagctcgaagccgccggcgtcgccgcgctggccgtgcccgacgagtatctggtcggt
cgcatcctgtcgcacgacgtggtcgatgcggcgaccggcgaactgctggccagcgccaac
gacgagatcagcgaagaccagctgaccgcgttccgcaaggccggcgtcgacgccgtgggc
acgctgtgggtgaacgatctggatcgcggtccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacgcagctggaagcgctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgccgtgtcggccgcaaggaagtc
accggcgagtcggtgctgtacgacaagaagtacttcggcgagcgcaacgacgaggagtcc
aagcgcctggtcgccgagcacgccgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggccgcggcgtggtcgacgacatcgaccacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtccgaaggcctgaccccgcaggagctg
atcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaaccctctgtcggaagtgacgcacaagcgtcgcgtctccgcg
ctgggcccgggcggtctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcatccg
acccactacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggcggtgtacgcccgcaccaaccagtacggcttcctggagacgccgtaccgt
aaggtcgtggacggccagatcaccgacgaggtcgaatacctgtcggcgatcgaagagaac
gagtacgtcatcgcccaggccaacgcgctgcacgacgccaagagccgcctgaccgagcag
ttcgtgccgtgccgctaccagggcgagtcgctgctgaagccgccggcggaagtgcacttc
atggacgtgtcgccgatgcagaccgtgtcgatcgcggccgcgctggtgccgttccttgag
cacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggccgtgccgacg
ctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgcggtggcgcgcgactcg
ggcgtgaccgtgaacgcgcgccgtggcggcgtgatcgagcagatcgacgccggccgcatc
gtggtcaaggtcaacgaggccgagatcggcggcggcaccgacgccggcgtcgacatctac
aacctgatcaagtacacgcgttccaaccagaacacctgcatcaaccagcgtccgctggtg
aacgtgggcgacgtgatcgcgcgcggcgacgtgctggccgacggcccctcgaccgacatc
ggcgagctggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgtgtggcgcgcgacaccaagctggggccggaggaaatctcc
gccgacatccccaacgtgtccgagcaggcgctgaaccgtctggacgagagcggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcg
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaggaaaac
gagatcaagcgggtcaagaaggacttcgatgaccagttccgcatcctggaaagcgcgatc
tatgcgcgtctgcgtggccaactgatcggcaaggtcgccaatggcggtccgaacctgaag
aagggcgacaccatcaccgacgcgtacctggacggactgaagaagtccgactggttcgcg
ctgcggatgaaggacgaggagccgtcggacgcgatcgagcgcgcgcagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggc
gacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagcccggcgacaagatggccggtcgccacggcaacaagggtgtcgtgtcgatgatc
cagccgatcgaggacatgccgtacatggccaacggcgagaccgtggacatcgtgctgaac
ccgctcggcgtgccgtcgcgtatgaacatcggccaggtgctggaagtgcacctgggctgg
gccgccaagggcctgggtcgcaagatccagaacatgctcgaggcccaggccaaggtcgcc
gacctgcgcaagttcctgacccagatctacaaccacgaccagaaactgggcgaggaccgc
gtggacctggatcagttcagcgatgccgagttgctggccctgtcgaagaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggtgcgaccgaggccgagatcaagcacatg
ctcgaactcgccgacctgccgatcagcggccagacccagctgtacgacggccgcaccggc
gaggcgttcgatcgccacaccacggtcggctacatgcacatgctgaagctgaaccacttg
gtcgacgacaagatgcacgcgcgctccaccggtccgtactcgctggtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggcgagcacgagatggtcgccggc
atgccggagtccttcaacgtgctggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagactga
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