Xenorhabdus nematophila AN6/1: XNC2_0445
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Entry
XNC2_0445 CDS
T03752
Symbol
hfq
Name
(GenBank) host factor I for bacteriophage Q beta replication, plays a role in degradation of RNA transcripts
KO
K03666
host factor-I protein
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm02024
Quorum sensing
xnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC2_0445 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XNC2_0445 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xnm03019
]
XNC2_0445 (hfq)
03036 Chromosome and associated proteins [BR:
xnm03036
]
XNC2_0445 (hfq)
Messenger RNA biogenesis [BR:
xnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
XNC2_0445 (hfq)
Chromosome and associated proteins [BR:
xnm03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
XNC2_0445 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
CEK21444
LinkDB
All DBs
Position
I:389376..389678
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AA seq
100 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHGSNQNAPAGVGNYHAGSNPATQQESDGAE
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttgcaagatccattcctgaatgctttacggcgtgaaagggtc
ccggtttctatttatttggtcaacggtatcaaattgcaggggcagattgaatcttttgac
caatttgtcattttactgaaaaacacggtcagccagatggtttataaacacgccatctct
acggttgtgccttctcgtcctgtgtctcatcatggtagcaaccaaaatgcgcctgctggc
gttggtaactatcacgcgggttctaacccggctacacaacaggaaagtgatggcgctgag
taa
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