Xenorhabdus nematophila AN6/1: XNC2_2627
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Entry
XNC2_2627 CDS
T03752
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03030
DNA replication
xnm03430
Mismatch repair
xnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XNC2_2627 (holB)
03430 Mismatch repair
XNC2_2627 (holB)
03440 Homologous recombination
XNC2_2627 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xnm03032
]
XNC2_2627 (holB)
03400 DNA repair and recombination proteins [BR:
xnm03400
]
XNC2_2627 (holB)
Enzymes [BR:
xnm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XNC2_2627 (holB)
DNA replication proteins [BR:
xnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XNC2_2627 (holB)
DNA repair and recombination proteins [BR:
xnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XNC2_2627 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
CEK23621
LinkDB
All DBs
Position
I:complement(2703917..2704906)
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AA seq
329 aa
AA seq
DB search
MNWYPWLNHAYRQLVESHQQGRGHHAILLHAHEGTGAGALLYGLSRWLMCQDKQGMKSCG
KCHGCHLMLAETHSDWHVLAPEKGKNSIGVDTVRQLSEKLYEYSQQGGAKIVWLPSAELL
TDAASNALLKTLEEPPQNTYFLLQCQHPANLLATLRSRCFYYFLPAPENTMGLYWLQNQL
PAIASLDAQTALKLSQGAPLAAERLLQADKWQQRNSLCQAIAQVLDKYDTLSLLPLLNCD
DVQQSLHWLISLLSDAVKWRQQAQNYCVNQDQQVLIHRLAATQNMEKLLSTVDDWIRCRH
QLLSVVGINRELLLTEQLLNWEKQLCSTQ
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgaattggtatccgtggctcaatcatgcgtaccgtcagttagttgagtctcatcaacaa
gggcgcggacatcatgctattttgcttcatgctcacgaaggaacgggggctggggcattg
ttatacggattgagtcgctggctgatgtgtcaggataaacaggggatgaaaagctgtggc
aaatgtcatggttgtcacttgatgttggcagaaacgcattctgactggcatgtccttgcc
cctgaaaaagggaaaaattccattggtgtggatactgtgcgtcagctcagtgaaaaactc
tacgaatactctcagcaaggcggggcaaaaattgtctggctgccatccgctgaattactg
actgatgccgcttccaatgctttgttaaaaacattggaggaaccgccccaaaatacttat
tttttgttgcaatgccagcatcctgcaaatttattggccacattacgtagtcgttgtttc
tactattttcttcctgcacctgaaaacacgatggggttgtattggttgcagaatcagctt
ccagccatagcatcattggatgcacaaactgcattaaaactctctcagggagcaccattg
gcagcggagcgattacttcaggctgataaatggcagcagagaaactcgctttgtcaggca
attgcacaggtactggataaatatgatactctttcacttttacccctgttgaactgtgat
gatgtccagcaatctttgcattggttaatcagtttattatctgatgcagtgaaatggcgg
caacaggcacagaattactgtgttaaccaagatcagcaggttttgattcatcgtcttgcc
gctacacaaaatatggaaaaattattaagtacagttgatgattggatacgctgccgccat
caattattatccgtagtgggcatcaatcgagagttgttattgacagaacaattactcaat
tgggaaaaacaactttgttccacgcagtaa
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