Xanthomonas oryzae pv. oryzae MAFF 311018: XOO3394
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Entry
XOO3394 CDS
T00360
Symbol
XOO3394
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XOO3394 (XOO3394)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xom03021
]
XOO3394 (XOO3394)
03400 DNA repair and recombination proteins [BR:
xom03400
]
XOO3394 (XOO3394)
Enzymes [BR:
xom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XOO3394 (XOO3394)
Transcription machinery [BR:
xom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XOO3394 (XOO3394)
DNA repair and recombination proteins [BR:
xom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XOO3394 (XOO3394)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BAE70149
UniProt:
Q2NZX8
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(3852870..3857021)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVESTKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG
RILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGANLK
KGDSVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDNAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAIHME
LEE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggatttcggtaagcagcgc
tcgattctcgaagtgccgtttctgcttgccatccaggtggattcctaccgcgaattcctg
caggaagatgtggagtcgaccaagcgcaaggacctcggtctgcacgcggcattgaagtcg
gtgttcccgatttccagctacagcggcaacgctgcgctggagtacgtcggttacaagttg
ggtcagccggtgttcgacgagcgcgaatgccgtcagcgtggcatgagctatggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtccaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctcggcgaaattccgctgatgaccggcaacggtacc
ttcatcgtcaacggcaccgagcgtgtgatcgtgtcgcagctgcatcgctcgccgggcgtg
tttttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccgtaccgcggttcctggttggacttcgagttcgacccgaaggatgcgctgttc
acccgtatcgaccgtcgccgcaagttgccggtgtcgatcctgctgcgcgcgctcggctac
aacaacgaagaaatgctggccgagttcttcgagatcaacaccttccacatcaatccggac
gaaggcgtgcagctggagctggtaccggagcgtctgcgtggcgaaacgctgaacttcgac
ctggccgatggcgataaggtcatcgtggaagccggtaagcgcatcaccgcgcgtcacgtc
aagcaactggaagccgccggcgttgccgcgctggccgtgccggacgactacctggtcggc
cgcatcctgtcgcacgacgtggtcgatggctccaccggcgaactgctggccaatgccaac
gacgagatcagcgaagaccaactgaccgcgttccgcaaggctggcgtcgatgcggtcggc
accctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccttgcgcatcgat
ccgaccaagacgcagctggaagcgctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggaagccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgcgtcggccgcaaggacgtg
ctgggcgagtcggtgctgtacgacaagaagtattttgccgagcgtaacgacgaagaatcc
aagcgcctggtcgccgagcacaccgacacctccgacatcctggaagtgatcaaggtcctg
accgagatccgcaatggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtaggcctggtccgcgtcgag
cgtgcggtcaaggagcgtctgtcgatggcggagtcggaaggtctgaccccgcaggaattg
atcaacgccaagccggtggctgcagcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccactgtcggaagtgacgcacaagcgtcgcgtctccgca
ctgggcccgggcggtctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcatccg
acccattatggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgttcgcccgcaccaaccagtacggcttcctcgagacgccgtaccgt
aaggtgctggacggcaaggtctccgacgacgtcgaatacctctcggcgatcgaagaaaac
gagtacgtgatcgcccaggcgaacgcgctgaccgatgcaaagaacatgctcaccgagcag
ttcgtgccgtgccggttccagggcgaatcgctgttgaaaccgccgtccgaagtgcacttc
atggacgtttcgccgatgcagaccgtttcggtcgcagcggcgctggtgccgttccttgag
cacgacgacgccaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccgacg
ctgcgttcgcagaagccgcttgtcggtaccggcatcgagcgtgcggttgcgcgcgactcg
ggcgtgaccgtcaatgcgctgcgtggtggcgtgatcgagcagatcgacgccgctcgtatc
gtggtcaaggtcaatgaggcagaaattggcggcggcaccgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aatgtgggtgacgtgatcgcgcgcggcgacgtgctggccgacggcccgtccaccgacatc
ggtgaactggcgctgggtcagaacatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgaacgcgtggtggaagaagatcgttacaccacgatc
cacatcgaagagctgacctgcgttgcgcgcgacaccaagctggggccggaggaaatttcc
gcagacatcccgaacgtgtccgagcaggcgttgaaccgtctggacgagagtggcgtggtg
tacattggtgcggaagtacgcgctggcgacatcatggtcggcaaggtcacgccgaagggc
gaaagccagctgaccccggaagaaaagctgctgcgtgccatcttcggtgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggatggcaccgtcatcgacgtg
caggtcttcactcgcgacggcatcgagaaggacaagcgtgcgcgtcagatcgaggaaaac
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcccgtctgcgctcgcagatcgtgggcaaggtcgccaacggtggcgcgaacctgaag
aagggcgactccgtcaccgacgcctacctggacgggctgaagaagtccgattggttccag
ctgcgcatgaaggacgaggacgctgccgacgccatcgagcgtgcgcagaagcagatccag
gcgcacgagaaggaattcgaagcacggtttgccgacaagcgcggcaagatcacccagggc
gacgacctcgcgccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgccggtggaagacatgccgtacatggccaccggtgagtcggtcgacatcgtgttgaac
ccgctcggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcatctgggctgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaggccgccgtcagc
gaactgcgcaagttcctggacgacatctacaaccacgacaacgcgatcaatgcgcagcgc
gtggatctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgac
ggcgtaccgatggccaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgcagagcggtcagacccagctgtacgacggtcgcactggc
gaagcgttcgatcgcaagaccacggtcggctacatgcactacctgaagttgaaccacttg
gtcgacgacaagatgcatgcacgttcgactggcccgtactcgctcgtcactcagcagccg
ctgggcggcaaggcgcaattcggtggtcagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgctgcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcagga
atgccggaatccttcaacgtgttggtgaaggaaatccgttcgctggcgatccacatggaa
ctggaagagtaa
DBGET
integrated database retrieval system
