Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_19310
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Entry
BE73_19310 CDS
T03868
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BE73_19310 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xoz03021
]
BE73_19310 (rpoB)
03400 DNA repair and recombination proteins [BR:
xoz03400
]
BE73_19310 (rpoB)
Enzymes [BR:
xoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BE73_19310 (rpoB)
Transcription machinery [BR:
xoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BE73_19310 (rpoB)
DNA repair and recombination proteins [BR:
xoz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BE73_19310 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AJQ88949
LinkDB
All DBs
Position
complement(4063215..4067366)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPTKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG
RILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLAAEHTDTSDILEVIKVLSEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLAEQ
FVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGDTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGANLK
KGDSVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDNAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggatttcggtaagcagcgc
tcgattctcgaagtgccgtttctgcttgccatccaggtggattcctaccgcgaattcctg
caggaagacgtggagccgaccaagcgcaaggacctcggtctgcatgcggcattgaagtcg
gtgttcccgatttccagctacagcggcaacgctgcgctggagtacgtcggttacaagttg
ggtcagccggtgttcgacgagcgcgaatgccgtcagcgtggcatgagctatggcgcgccg
ctgcgcgtgactgtgcgcctggtgatctacgaccgcgagtcgtcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctcggcgaaattccgctgatgaccggcaacggtacc
ttcatcgtcaacggcaccgagcgtgtgatcgtgtcgcagctgcatcgctcgccgggcgtg
tttttcgaccatgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccgtaccgcggttcctggttggacttcgaattcgacccgaaggatgcgctgttc
acccgtatcgaccgtcgccgcaagctgccagtgtcgatcctgttgcgcgcgctcggctac
aacaacgaagaaatgctggccgagttcttcgagatcaacaccttccacatcaatccggac
gaaggcgtgcagctggagctggtcccggagcgtctgcgtggcgaaacgctgaactttgac
ctggccgatggcgacaaggtcatcgtggaagccggtaagcgcattaccgcgcgtcacgtc
aagcaactggaagccgccggcgttgccgcgctggccgtgccggacgactacctggtcggc
cgcatcctgtcgcacgacgtggtcgatggctccaccggcgaactgctggccaatgccaac
gacgaaatcagcgaagaccaactgaccgcgttccgcaaggctggcgtcgatgctgtcggc
accctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccttgcgcatcgat
ccgaccaagacgcagctggaagcgctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggaagccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagtttaaccgtcgcgtcggccgcaaggacgtg
ctgggcgagtcggtgctgtacgacaaaaagtactttgccgagcgtaacgacgaagaatcc
aaacgcctggccgccgagcacaccgacacctccgacatcctggaagtgatcaaggtcctg
agcgagatccgcaatggtcgcggcgtggtcgatgacatcgatcacctaggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgtgcggtcaaggagcgtctgtcgatggcggagtcggaaggtctgaccccgcaggaattg
atcaacgccaagccggtggccgcagcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgca
ctgggcccgggcggtctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcatccg
acccattatggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgttcgcccgcaccaaccagtacggcttcctcgagacgccgtaccgt
aaggtgctggacggcaaggtctccgacgacgtcgaatacctgtcggcgatcgaagaaaac
gagtacgtgatcgcccaggcgaacgcgctgaccgatgcaaagaacatgctcgccgagcag
ttcgtgccgtgccggttccagggcgaatcgctgttgaagccgccgtccgaagtgcacttc
atggacgtttcgccgatgcaaaccgtgtcggtcgcagcggcgctggtgccgttccttgag
cacgacgacgccaaccgcgcactgatgggcgccaacatgcagcggcaggccgtgccgacg
ctgcgttcgcagaagccgctggtcggtaccggcatcgagcgtgcggttgcgcgcgactcg
ggcgtgaccgtcaatgcgctgcgtggtggcgtgatcgagcagatcgacgccgctcgtatc
gtggtcaaggtcaatgaggcagaaattggcggcgacaccgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aatgtgggcgacgtgatcgcgcgcggcgacgtgctggccgacggcccgtccaccgacatc
ggtgaactggcgctgggtcagaacatgctgatcgccttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgaacgcgtggtggaagaagatcgttacaccacgatc
cacatcgaagagctgacctgcgttgcgcgcgacaccaagctggggccggaggaaatttct
gccgacatcccgaacgtgtccgagcaggcgttgaatcgtctggacgagagtggcgtggtg
tacatcggtgcggaggtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gaaagccagctgaccccggaagaaaagctgctgcgtgcgatcttcggtgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtcatcgacgtg
caggtcttcactcgcgacggcatcgagaaggacaagcgtgcgcgtcagatcgaggaaaac
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcccgtctgcgctcgcagatcgtgggcaaggtcgccaacggtggcgcgaacctgaag
aagggcgactccgtcaccgacgcctacctggacgggcttaagaagtccgattggttccag
ctgcgcatgaaggacgaggacgctgccgacgccatcgagcgtgcgcagaagcagatccag
gcgcacgagaaggaattcgaagcacggtttgccgacaagcgcggcaagatcacccagggc
gacgacctcgcgccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgcccgtggaagacatgccgtacatggccaccggtgagtcggtcgacatcgtgttgaac
ccgctcggcgtgccgtcgcgtatgaacatcggccagattctggaagtgcatctgggctgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaagccgccgtcagc
gaactgcgcaagttcctggacgacatctacaaccacgacaacgcgatcaatgcgcagcgc
gtggatctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgac
ggcgttccgatggccaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgcagagcggtcagacccagctgtacgacggtcgcactggc
gaagcgttcgatcgcaagaccacggtcggctacatgcactacctgaagttgaaccacttg
gtcgacgacaagatgcatgcacgttcgactggtccgtactcgctggtcactcagcagccg
ctgggcggcaaggcgcagttcggtggtcagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagagtaa
DBGET
integrated database retrieval system
