Xanthomonas sontii: RAB70_10280
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Entry
RAB70_10280 CDS
T10538
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xso Xanthomonas sontii
Pathway
xso00040
Pentose and glucuronate interconversions
xso01100
Metabolic pathways
xso02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xso00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RAB70_10280
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RAB70_10280
Enzymes [BR:
xso01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RAB70_10280
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
GPAT_N
Motif
Other DBs
NCBI-ProteinID:
XCI86615
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Position
2458842..2459906
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AA seq
354 aa
AA seq
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MQQQFRRGALALALAVGAAPAFAGPVGYGANTTGGGNAIPVNVATMEAMQAAIDNYAGSG
GLVLNYTGSFNYASITDVCTQWKLPAKTVQIKNKRDITIKGANGSSANFGVRVVGNAHNV
IIRNMTIGLLPGGEDADSISLEGNSSGQPSNIWVDHNTIFASLTKCPGAGDASFDGGIDM
KKGVNHVTVSYNYIHDYQKVALNGYSDSDTQNAAARTTYHHNRFENVESRLPLQRRGLSH
IYNNYFNNVFTSGINVRMGGVALIEANYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
TVPESTSKPYANATTWISSKTYPESLGYMYTAIPAAQVKAKVIATAGAGTNLAE
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagttccgcaggggcgcactggcgctcgctctggccgtcggcgccgccccg
gccttcgccggcccggtcggctacggcgccaacaccaccggtggcggcaacgccattccg
gtcaacgtcgccacgatggaggcgatgcaggcggcgatcgacaactacgccggctccggc
ggcctggtgctcaactacaccggcagtttcaactacgccagcatcaccgacgtatgcacg
caatggaagctgccggccaagaccgtgcagatcaagaacaagcgcgacatcaccatcaaa
ggggcgaacggctcctcggccaacttcggcgtgcgcgtggtcggcaatgcgcacaacgtc
atcatccgcaacatgaccatcggcctgctgcccggcggcgaggacgccgattcgatctcg
ctggaaggcaattccagcggccagccgtccaacatctgggtggaccacaacaccatcttc
gcctcgctgaccaaatgccccggcgccggcgacgcgtccttcgacggcggcatcgacatg
aagaagggcgtcaaccacgtcaccgtgtcgtacaactacatccacgactaccagaaggtc
gcgctcaacggctacagcgacagcgatacccagaacgccgctgcgcgcaccacctaccat
cacaaccgcttcgagaacgtggaatcgcgcctgccgctgcagcggcgcgggttgagccac
atctacaacaactacttcaacaacgtcttcacctccggcatcaacgtgcgcatgggcggg
gtggcgctgatcgaagccaactacttcgagaacatcaagaacccggtgacctcgcgcgac
agcagcgagatcggctactgggacctgatcaacaactacgtcggcagcggcatcacctgg
acggtgccggagagcaccagcaagccctacgccaacgccaccacctggatctcgtccaag
acctatcctgagtcgctgggttacatgtacacggcgatccctgccgcgcaggtcaaggcc
aaggtcatcgccaccgccggtgccggcaccaacctggccgagtga
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