Xenopus tropicalis (tropical clawed frog): 100036630
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Entry
100036630 CDS
T01011
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100036630 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100036630 (cnot1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100036630 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100036630 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
100036630
NCBI-ProteinID:
NP_001090658
Xenbase:
XB-GENE-1032888
UniProt:
A0JP85
LinkDB
All DBs
Position
4:75591932..75673008
Genome browser
AA seq
2388 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSCELRGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEV
LHLLLSNLLFGQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
ADSGGITKTMMDSSLADFMQEVGYSFCASVEECRNVIVQFGVREVTAVQVARVLGMMART
HSGLTDGIPLQSITSPGSGIWSDGKDKNDAVQPHTWNVEVLIDVVKELNPTLNFKEVTYE
LDNPSFQIRDSKGLQTVVYGIQRGLGIEAFPVDLVYRPWKNAEGQLSFIQHSLVNPDVFC
FADYACHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAELGQYEQVKQLFAYPIKHC
PDMLVLALLQINTTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPIAAMASL
SIGGSAAPHTQSMPVFPPNLGSAFSTPQSPAKAFPPLTAPNQSTAFSGLGGLTSQLPGGL
GTGSLTGMGTGGLSLPTVNSDPFGQRKLSTSGLNQPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYQSKMYFFGIAALDRFKNRLK
DYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALSQAQTPAKP
ASSSAVTTPTTTTPAKTITITRPTGVSFKKDVPPSINTTNIDTLLVATDLAGQIVEPPEN
VQEKIAFIFNNLSQSNMTQKVEELKETVKDDYMPWVSQYLVMKRVSIELNFHSLYSNFLD
ALKHLEFNKMVLAETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD
LDLKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMAIMNVLAELHQEHD
LKLNLKFEIEVLCKNLVLDINDLKPGTLLKDKDRLKSLDEQLSAPKKDVKQPEELPPMTS
ASEYAIRTAGKLWASVEKQESDAVFTATATAPPPSTTCTTTVPPQPQYSYHDIHVYSLAG
LAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA
LDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMME
QAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRPATEFELRKHARQEGRRYCDPVVLTYQ
AERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDV
AQIYDKCITELEQHLHAIPPALSMNPQSQALRSLLEAVAVARNSRDAIAALGLLQKAVEG
LLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHVTEAEFFHTI
ETLMRINAHSRGNAPEGLPQLMDVLRSNFDAMMERAHGGPNFMMHSGISQASEYDDPPGL
REKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVE
ISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLG
IVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRP
TKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPM
QILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTP
NLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGN
RYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLN
AIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIE
LIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctaccttgtggacaatttg
acgaagaaaaactacagagccagccagctggaaatacaacatattgtgaatcgacacggt
cctgaggcagacaggcacttgttacgctgtctattctcacatgtggatttcagtggagat
ggtaaaagcagtggcaaggattttcatcagacacagtttttaattcaggagtgtgcatct
ctgatcaccaagccgaatttcatctctacactgtcatatgccattgacaatcctttgcac
taccaaaagagtctgaagccttctccccatctttttgcccagctaagtaaagttctgaag
cttagcaaggttcaagaggttatctttggccttgcccttcttaactcttctagctgtgaa
ctacggggatttgctgcccagtttgtgaaacaaaaacttccggacctactgcgttcttac
gttgacgtggacgttagtggcagtcaagaaggtggattccaggacattgccatagaggtc
ctgcacctcctcctctccaacctcctttttggccagaaaggagcttttggggtgggacag
gagcagattgtagcatttctcaagactctacgcagagatttcccacaggaacgctgcccg
gtggtgcttgcaccactgctttatcctgaaaaacgggacattctaatggaccgaatctta
gctgattctggagggatcaccaaaaccatgatggatagttctctggctgactttatgcag
gaagtgggctacagcttctgtgccagtgtggaagaatgtcgcaatgtaattgttcagttt
ggtgtccgagaggttacagctgtacaagttgcaagagtgcttgggatgatggctcgaaca
cactctggtctaactgatggcattcctttacagtctatcacttcccctggcagtggaatt
tggagtgatgggaaggataaaaatgatgctgttcagccacatacctggaatgttgaagtt
ttgatagatgttgtcaaagagctgaatcccactctaaacttcaaagaggtgacatatgaa
cttgataacccaagttttcagatccgtgacagtaaaggtcttcaaactgtcgtatatggc
atccaaagaggtcttggtatagaggcgtttccagttgatctcgtctatagaccttggaaa
aatgcagagggacagctttcctttattcagcactcattagtgaaccctgatgttttttgc
tttgctgactacgcctgccatgctgttgctaccgatattttaaaggctccaccagaagat
gataatcgtgaaattgctacatggaagagtttggatttgattgagtctctgcttcgactg
gccgagttgggacagtatgagcaagtaaaacagctctttgcctacccaataaagcactgc
ccagatatgttagtgttggccttgctacaaattaataccacgtggcataccttgcgccat
gaactaatctctacacttatgccaatattccttggaaaccaccccaactctgccataatt
ttgcactatgcttggcatggacagggacagtcaccatcaatacggcagcttatcatgcat
gcaatggcagagtggtacatgcgtggtgagcagtacgatcaagcaaggctctctcgtatt
cttgatgtggcccaggacttaaaggcgttgtcaatgctgttaaatggcactccatttgcc
tttgttattgatcttgctgcacttgcctctcgccgggagtacctcaaacttgacaagtgg
ctcacagataaaatacgagagcatggggaaccattcatccaggcttgtatgaccttttta
aagagacggtgtccttctatactgggtggtcttgcaccagagaaagatcagcctaaaagt
gcccagctgccacctgagactttggcaacaatgttggcatgtttacaagcctgtgctgga
agcgtttctcaggaactttcggaaaccatacttaccatggttgcaaactgcagtaatgtt
gtaaacaaagcaagacagcctcctcctggggttatgccaaaaggccgtcctccaagcact
agcagcctggatgcaatctcacctgttcagattgatcctattgcagccatggcctctctc
agcattggtggatctgctgcacctcacactcaaagtatgccagttttccctccaaatttg
gggtctgcttttagtaccccacagtctccagcaaaggcattcccacctcttactgctcca
aaccaatccactgctttcagtggccttggtgggttaacttcacaacttccaggtggactt
ggaacaggtagcttgactggtatgggaacaggtggacttagtcttcctacggtgaatagt
gatccctttgggcaaaggaaactgagtacatctggacttaaccagcccacttttcagcaa
acggacttgtctcaggtgtggccagaggcaaaccagcactttagtaaagaaatagatgat
gaagcaaacagctacttccagcgcatctacaatcaacctccacacccaactatgtctgtg
gatgaggtgttggaaatgctgcagaggttcaaagactctaacataaaacgggaacgtgaa
gttttcaactgtatgctgaggaatttgtttgaagaatatcgtttttttcctcagtaccca
gacaaagaactgcacataactgcttgcctttttggtggcataattgaaaaagggctggtt
acctacatggctcttggcttggccctacgctatgtacttgaagcactgcgtaaaccttat
caatccaaaatgtacttctttggcatagctgcactagatcgctttaaaaatagattgaag
gattatcctcagtattgtcagcacttggcttctattagtcactttatgcaattcccccat
cacttgcaggagtatatagaatacggacaacaatcaagagatcccccggtaaagatgcag
ggctctattacaactccaggaagcattgcactctctcaagcacagactcctgccaaacca
gctagcagcagtgctgtcacaacccctactactaccaccccagcgaaaaccatcacaata
actaggcctactggtgttagcttcaagaaggatgtaccaccttccatcaacacaaccaac
atagacacactcctggttgctacagatcttgcgggacagattgttgaaccaccagagaac
gttcaagagaagattgctttcatctttaacaatttgtcccagtccaatatgactcagaag
gtagaggagctgaaagagactgtaaaggatgactacatgccttgggtatcgcagtattta
gtaatgaaaagggtcagcatcgagctcaatttccacagcctgtattccaactttctggac
gcgcttaagcatttggaattcaacaaaatggttctagctgagacctacagaaatatcaag
gtgcttttgacatccgataaagctgctgcaaatttttctgaccgctccttgctgaagaac
ttgggacattggttaggcatgattacactggcaaagaacaagccaattctgcacacggac
ttggatttaaagtcgttgctgctagaagcttatgtgaagggacagcaggaacttctctat
gttgtgccttttgttgccaaagtcttggagtctagtgttagaagtgtggttttccggccc
ccaaatccctggacaatggccataatgaatgtgttagctgagcttcatcaagaacatgat
ttaaagctaaatctgaagtttgaaattgaagtcttatgtaaaaatctggtgttggacatc
aatgacttaaagcctggcaccctattgaaagacaaagatcgactgaaaagcttggacgaa
caactttctgctcccaaaaaggatgtaaaacagccggaggaactacctccaatgactagt
gccagcgaatacgccattcgaactgctggcaaactttgggcgtcagtggaaaagcaggaa
tctgatgcagtttttacagcaacagctactgctccaccaccaagcacaacatgcaccaca
actgttccgccacagcctcagtatagctaccatgatattcatgtttactcactggcaggc
cttgctcctcatatcacacttaatcccacaattcctctgtttcaagcccacccacaactg
aagcagtgtgtgcgacaggcaattgagagggcagtacaggaacttgttcaccctgttgtc
gatcggtccatcaagattgcaatgacaacctgtgagcagattgtgcgcaaagactttgct
ttagattctgaagagtctcgtatgagaattgccgctcatcatatgatgcgtaacctgact
gctggtatggctatgattacatgccgtgagcccctgctcatgagcattgccaccaacctg
aagaatagctttgcaacagctatgcgggctgcttcccctcagcagcgggaaatgatggag
caggctgctgcacagcttgctcaggacaactgtgaattagcctgctgttttatacagaag
actgcagtggaaaaggctggacctgaaatggacaagagaccagcaactgaatttgaactg
cgaaagcatgcaaggcaagaagggagacgttactgtgatcctgtagtattaacttaccag
gcagaacgtatgccagagcagatacgtttgaaggttgggggtgtggaccctaaacagctg
gctgtttatgaggaatttgcacgtaatgttcctggattccttcccacaaatgacctaacg
cagcccacaggatttctggcacagcctatgaagcaacaagcctgggccacagatgacgtt
gcacagatctatgataagtgtataactgagttagagcaacatttacatgcaataccacca
gcactgtccatgaatccgcagtcccaagccctgcgaagtctactggaagctgtagcagtt
gcccggaattcaagggatgccatagctgcactaggactcctgcaaaaggctgttgaaggg
ctgctagatgccacaagtggggcagatgcagaccttcttctccgttatcgggaatgtcac
cttctggtattaaaggctctgcaggatggacgtgcctatggttctccttggtgcaacaaa
caaataaccaggtgtttaatagagtgccgcgatgaatataaatataatgtggaggctgta
gagcttctgatccgaaatcacctggtgaacatgcagcaatatgacctccatttggctcag
tccatggagaatggcttgaattacatggctgtggcctttgccatgcagttagttaagata
ctgcttgtggatgaacgaagtgtgagccatgtgaccgaggctgaattttttcacactatt
gagacactgatgcgtattaatgcacactcaagaggcaatgcccctgaaggacttcctcaa
ctaatggatgttctacgctccaattttgatgcaatgatggaacgggcacatggaggtcct
aacttcatgatgcattctggtatctcccaagcttcagagtatgatgacccacctggcctg
agggagaaggcagagtacctattaagagagtgggttaatctataccattctgctgctgct
ggacgtgatagtaccaaagctttctctgcatttgttggccaaatgcatcagcaagggatt
ctgaagactgatgacctgatcacacggttctttcgcttgtgcacggagatgtgtgtggag
ataagttaccgggctcaagctgagcaacaacacaacccagctgcaaatcccacaatgatt
cgagcaaaatgttaccacaatttagatgcttttgtgcgtcttatagctctgttggtcaaa
cattctggagaagctacaaacacagtgacaaaaataaatcttttgaacaaggtacttggt
attgttgttggagtacttctacaggaccatgaagtgcgacagagcgagtttcagcagtta
ccttaccatcgcatctttattatgttgttgttggaattaaatgcccctgaacatgtgcta
gaaacaataaattttcagacactgacagcattttgcaatacttttcacattcttagacca
actaaagcaccaggctttgtctatgcatggcttgaactgatttcccatcgaatatttatt
gcccgaatgttggctcacacaccccaacaaaagggctggccaatgtatgcacagctatta
attgatcttttcaagtacttggcaccttttttaaggaatgtggaattgacaaaacctatg
cagattctttacaagggcacgcttcgtgtgcttctagttttgcttcatgactttccagag
ttcctttgtgattatcattatgggttttgtgacgtgattccaccaaactgcatacagctg
aggaatctgattctgagtgccttcccacgtaatatgagactgccagatcccttcacaccc
aatcttaaggtggatatgttaagtgagataaacattgctccccgtattcttacaaatttc
actggagtaatgcctccacagttcaaaaaggatttggattcttatctaaagactcgttca
cctgtcacatttctctcagagctccgcagcaacttgcaggtttcaaatgagcctggtaat
cgctacaatatccagttgattaatgcattagtactctatgtggggactcaggctattgct
catattcacaacaagggtagcacaccctccatgagcaccattacccactctgcacatatg
gacatcttccagaacctggctgtggacttagacactgaaggacgctacctctttttgaat
gctattgccaatcaactacggtatcccaacagccatactcactactttagctgcacaatg
ctttatctctttgctgaagcaaacactgaggcgatacaggaacaaattacaagggttctt
cttgagcgactgattgtgaatagaccacatccttggggactcctcataacattcatcgag
cttattaaaaaccctgcattcaagttctggaaccatgagtttgtacattgtgcaccagaa
attgaaaagttgttccagtctgttgcacagtgctgcatggggcaaaaacaggcccagcaa
gttatggaaggcacaggagccagctaa
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integrated database retrieval system
