Xenopus tropicalis (tropical clawed frog): 100145619
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Entry
100145619 CDS
T01011
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain precursor
KO
K08131
collagen type IX alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100145619 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100145619 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100145619 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xtr00535
]
100145619 (col9a3)
Proteoglycans [BR:
xtr00535
]
Extracellular matrix (ECM) proteoglycans
Others
100145619 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100145619
NCBI-ProteinID:
NP_001120497
Xenbase:
XB-GENE-997413
UniProt:
B1H3F6
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Position
10:complement(2451593..2490159)
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AA seq
676 aa
AA seq
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MARIPTLGLLLLLHLVTSQGQRAGPRGPPGPPGPPGINGKDGIDGEQGPAGLPGPLGPKG
IPGKPGEAGKAGLAGLPGIDGLTGPDGKAGPDGPPGERGDVGPSGPDGAPGRGPQGTPGL
AGPSGLTGGVGPQGTAGPAGQPGLPGPPGPPGPPGLPGVAPDGNGDLQCPAVCPPGPAGP
PGMPGFKGHTGHKGERGETGKNGQKGDPGPPGPSGIPGSVGLQGPRGLRGLTGPQGAAGD
RGPTGVRGPPGPPGPPGKAGDQGEKGHPGYRGPKGDTGKAGPKGMPGGPGPIGEPGMPGQ
DGRDGIPGLDGEKGDPGRVGVPGEKGPNGLPGLNGKAGAKGEKGQLGSPGELGEAGPSGE
PGIPGEAGPPGDRGEAGPRGTAGGVGLQGPIGGPGVRGFQGIKGSIGDPGLPGPTGIRGG
FGERGPIGAAGPKGNQGIAGSDGLPGDKGEMGHFGPVGQKGEPGVRGELGPKGVAGPNGT
AGVPGIPGPPGAMGFQGEQGVPGITGKPGVPGKLASEQHIRELCGGMISDQIAQLAANLR
RPLAPGLVGRPGPAGPPGPQGAPGRIGHTGSRGPSGYRGPTGELGHPGPRGDQGVKGDKG
LVGRGVDGPFGDQGLQGPQGGPGTSRDGRDGAHGEPGFPGEPGRAGSIGAQGTPGICDTS
ACQGAMAAGKSSAKKS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaatcccaactcttggcctcctattactgttacacctggtgacttcccaaggg
cagagagctggcccacgcggacccccaggaccaccaggacccccaggaataaatggaaag
gatggaatagatggcgaacaaggaccagctggattacctggccccctgggtcccaaagga
atccctggaaaacccggagaagcaggaaaggcaggcttggcgggactgccgggcattgat
ggactgaccggaccagatgggaaagctggaccagatggaccaccaggagaacggggagac
gttggcccctcaggaccagacggagccccaggacgaggaccacagggaacccctggcctt
gccggaccgagtggattaacgggcggagttggaccccaaggaacagcgggacctgctggc
caacctggacttcctgggccaccaggccccccaggccccccaggcctcccgggagttgct
cctgatgggaatggagacctgcagtgcccagctgtttgtccccctgggccggccggaccc
cctgggatgccaggattcaagggccacaccgggcacaaaggggaaaggggggagactgga
aagaatggacagaagggagaccccggcccccccggaccctctgggatccctggcagtgtg
ggcttacagggcccaagaggtctaaggggattaactgggccccaaggagctgcaggagac
aggggccccactggagtccgtggccctccaggacctcctggaccccctggtaaagctggg
gatcaaggagaaaaagggcacccgggataccgaggacccaaaggagacacgggtaaagct
ggccctaaaggaatgcccggcgggcctggccccattggggaaccgggcatgccaggccag
gacgggcgcgacgggatcccaggactggatggtgagaagggtgatccaggcagagtggga
gttccaggagaaaagggacccaatggcctccctggcctgaatggcaaagccggagccaaa
ggagagaagggccagttgggaagcccgggagagctgggagaagcaggaccctctggagag
ccaggtatccccggtgaagctggacccccaggagacagaggggaagcaggacccagagga
actgctggcggcgttgggctgcagggaccaataggaggccccggagtccgtggatttcag
ggaattaaaggcagcattggagatcccggcttacctggccccactggaattcgaggtgga
tttggagagcggggtcccattggagctgcaggtcccaaaggcaaccagggcattgctgga
tccgatggactcccaggggataagggagagatgggacattttggcccagtcggacagaaa
ggagagccaggtgtgcggggcgagctcggacctaagggcgtggccgggcccaatggtact
gctggtgtccccggtatccccggccccccaggtgcaatgggtttccaaggagagcaggga
gtccctggaattaccgggaagcctggcgttcctggcaaactggcaagcgaacagcacatc
cgggagctctgcgggggcatgataagcgaccaaatcgcacagctagctgctaacctcaga
aggcccttggctccaggcttggtgggacgtccaggtcctgctggaccaccgggaccccaa
ggagccccaggtcggataggacatactggttctcgaggcccatctggatacaggggtcca
actggagagctcggccatcctggtccaagaggggaccagggtgtgaaaggagacaaggga
ttggtcggacgaggcgttgatggaccatttggagaccaaggacttcaagggccacagggg
ggacccggcacgagcagagatgggcgagatggggcccacggtgagcccggattccctgga
gaacccggaagagcgggatcgataggggcacagggcactcccggaatatgcgacacgtca
gcttgccaaggtgccatggccgccgggaaatctagcgccaagaaatcctaa
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