Xenopus tropicalis (tropical clawed frog): 100485035
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Entry
100485035 CDS
T01011
Symbol
cacna1s
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1S
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04020
Calcium signaling pathway
xtr04260
Cardiac muscle contraction
xtr04261
Adrenergic signaling in cardiomyocytes
xtr04270
Vascular smooth muscle contraction
xtr04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100485035 (cacna1s)
04020 Calcium signaling pathway
100485035 (cacna1s)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
100485035 (cacna1s)
09153 Circulatory system
04260 Cardiac muscle contraction
100485035 (cacna1s)
04261 Adrenergic signaling in cardiomyocytes
100485035 (cacna1s)
04270 Vascular smooth muscle contraction
100485035 (cacna1s)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100485035 (cacna1s)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
100485035 (cacna1s)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
DUF2670
Motif
Other DBs
NCBI-GeneID:
100485035
NCBI-ProteinID:
XP_031752682
Xenbase:
XB-GENE-5823874
UniProt:
A0A6I8QW04
LinkDB
All DBs
Position
2:63824798..63908527
Genome browser
AA seq
1689 aa
AA seq
DB search
MLPSGTTMEEGTQKKKKKPLVPPSPRPPRSLFCLGLQNPFRKSCINIVEWKPFEMIILLT
IFANCIALAIYLPMPEDDTNSVNTILEKIEYIFLFIFTIEAALKIVAYGFILHSDAYLRN
CWNILDFTIVSVGLFTIVLEQINKVQGVTAPGGTGFNVKALRAFRVLRPLRLVSGVPSLQ
VVLNSIIKAMVPLLHIALLVLFMIIIYAIVGKELFSGKMHKTCYYKATDVIATVEKPSPC
STTGQGRQCAINGSECRGWWPGPNNGITHFDNFGFAMLTVYQCITMEGWTEVLYWVNDAI
GNEWPWIYFVSLILLGSFFVLNLVLGVLSGEFTKEREKAKSRGAFQKLREQQAMDEDLRG
YLDWITHAEVMDPDMEQGDGFSQLEEGCSETESLYELEGINKFISFLKQWRHWHRLLRRK
CRDLVKSRFFYWFVILIILFNTITIATEHHNQPEWLTKAQDIANQVLLAMFTLEMVLKIY
ALGFQSYFMSLFNRFDCFVVCTGILEILLVSSNIMSPLGISVLRCIRLLRIFKITRYWTS
LNNLVASLLNSVRSIASLLLLLFLFMIIFALLGMQMFGGKFDFEDTEIRRSTFDNFPQSL
ITVFQILTGEDWNSVMYNGIMAYGGPTFPGMFVCIYFIILFVCGNYILLNVFLAIAVDNL
AEAENLTSAQKAKAEERKRKKLARAHPDKSEEEKLLLAKKLEMKAKGEGIPTTAKLKIDE
FESNVNEIKDPYPSADFPGDDEEEEPEIPISPRPRPLAELQLKEKAVPMPDASSFFIFGP
TNKFRVLCHRIVNATTFTNFILLFILLSSISLAAEDPIEPESFRNQILAYFDYVFTAIFT
TEIALKMTTYGAFLHKGSFCRNYFNILDLLVVAVSLVSFGIQSSAISVVKILRVLRVLRP
LRAINRAKGLKHVVQCVFVAIKTIGNIVLVTTLLQFMFSCIGVQLFKGKFYSCTDTTKMT
EEECRGYFIVAKDGDSTQIQLRERIWTHSDFHFDNVLSGMMSLFTISTFEGWPQLLYRAI
DSHSEDMGPIYNYRIEIAVFFIIYIILIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKN
QRQCVQYALKARPLRRYIPKNQHQYKIWYLVTSSYFEYLMFALIMLNTISLGMQHYGQTA
EFSHLSDILNVAFTGIFTVEMVLKLAAFKAKGYFGDPWNVFDFLIVIGSIIDVILSEIDT
PEPVVTPGSEDTSRISITFFRLFRVMRLVKLLSRGEGVRTLLWTFIKSFQALPYVALLIV
MLFFIYAVIGMQVFGKIAMVDGTQINRNNNFQTFPQAVLVLFRCATGEAWQEILLACSYG
KLCDPKSDFLPGEEYTCGTSFAYFYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILG
PHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPL
NSDGTVTFNATLFSLVRTALKIKTEGNFEQSNEELRMIIKKIWKRTSMKLLDQVIPPIGD
DEVTVGKFYAIFLIQEHFRKFKKRQEEYYGYRPKKNNVEIQAGLRTVEEEVEPEMQRAIS
GDLTAEEELERAMVEAAIEEGIYRRTGGLFGQEENFPEPVSPVHTTITSQRPLRFSEAGS
EDLESPVFLPDPVFFPPPRRNRNTNNSTLSRGLGERLTTPEEDLKQNISEQWDASTNASQ
EDLSDHFSL
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgcttccaagtggcaccacaatggaggaaggaactcagaagaaaaaaaagaagccgcta
gtgccaccttctccacgcccccctcgttcacttttctgccttggactgcaaaacccattc
aggaaaagctgcataaatattgttgaatggaaaccatttgagatgatcattctgttgacc
atatttgctaactgcatcgcactagccatctacctgcccatgccagaggatgacaccaac
tcagttaacacaatcctggaaaagattgaatatatcttcctttttatattcaccattgaa
gcagctctaaagatagtagcatatgggtttattctacattctgatgcatacctacgcaat
tgctggaatatcttggacttcaccattgtctctgttggacttttcacaattgtcctggaa
caaatcaataaggttcagggtgtaacagcaccaggaggaactggctttaatgttaaagcc
ctgagagctttccgtgttcttaggcctcttcgtttggtgtctggagtgccaagtcttcaa
gtagtgctgaattctataattaaagcaatggttccattactccacattgctttgctcgtc
cttttcatgatcataatatatgctattgttggaaaagaacttttctctgggaagatgcac
aaaacttgttattacaaagcaacagatgtaattgccacagttgagaaaccctccccatgc
agcacaacaggtcagggtcgccagtgcgcaataaatgggagtgaatgcagaggctggtgg
ccaggacctaacaatggcattacacactttgacaatttcggttttgccatgctgactgta
tatcagtgcatcaccatggagggatggacagaggtgctctactgggtcaatgatgctatt
ggcaatgaatggccctggatttactttgtaagtcttatcctacttggatcgttcttcgta
ctcaatctagttttgggtgtcctgagcggagagttcaccaaggagcgtgaaaaagcaaaa
tcacggggtgctttccagaagttgagagaacaacaggcaatggatgaggatctgcggggt
tatttggactggatcacacatgctgaagtcatggacccagacatggaacaaggagatgga
ttttcacaattagaagaaggttgctcagagacagaaagtctctatgaattggagggaata
aacaagtttataagcttcttgaaacagtggcgtcattggcaccggctcctgcgcaggaag
tgtcgtgatcttgtaaaatccagatttttctattggtttgttatccttatcattctattt
aacaccattaccatagcaacagagcatcataaccagccagaatggctgactaaagcccaa
gatatcgcaaatcaagtacttttggcaatgttcactttagaaatggtactgaagatatat
gcattgggcttccagtcatattttatgtcactatttaatcggtttgactgctttgtggta
tgtactggtattctagagattttgctggtctccagcaacattatgtctcctcttggaata
tcagtcctccgttgtattcgattactgaggatcttcaagatcacacggtactggacatcc
ttaaataatctggtggcttctcttctcaactctgttcgttctattgcttctctcctcctt
ctgcttttcctcttcatgatcatctttgctctgcttggaatgcagatgtttggtggcaag
tttgactttgaggatacagagattcgcaggagtacatttgataactttccacagtcgctg
atcactgtcttccagatattgactggggaggactggaactctgtcatgtataatggaata
atggcctatggtggtcctactttccctggaatgtttgtctgcatctatttcattatcttg
ttcgtttgtgggaattatattttgctgaatgtgtttcttgctattgcagttgataattta
gcagaggcagagaatctcacatccgctcaaaaagcgaaggctgaggaacgcaagaggaaa
aagttagctcgtgctcatcctgacaaatcagaagaagaaaagttgttactggcaaagaaa
ctagaaatgaaagcaaaaggtgaaggtatacccactacagccaagctaaagatagatgaa
tttgagtctaatgttaatgaaataaaggatccatatccatctgcagacttcccaggtgat
gatgaagaagaggaaccagaaattcctatcagtcctcgaccacggcccttggcagagctt
caactgaaagagaaggcagtgcccatgcctgatgctagttctttttttatctttggcccc
actaacaagttccgggttctttgtcaccgcattgttaatgccacgacttttacaaatttt
atcctgctgttcattctgcttagcagcatctccttggctgctgaggatccaattgagcca
gagtcatttcgcaatcagatccttgcttattttgattatgttttcactgccatttttaca
actgaaattgctttgaagatgactacatatggtgcatttcttcataaaggctcattctgc
agaaattattttaacattcttgatcttctggtagttgccgtttctcttgtctcttttggt
atccaatcaagtgctatctctgtagtgaaaattctgagggttctcagagttttgcgccct
ctcagagcaataaaccgtgccaagggtctaaagcatgtggttcagtgtgtttttgtagct
ataaaaaccattggaaacattgttcttgtgaccacccttctacagttcatgttctcttgt
attggagtgcaactatttaagggcaagttttacagctgcacagacaccaccaaaatgaca
gaggaagaatgcagggggtattttattgtggcaaaggatggggactcaactcaaattcag
ctaagagagagaatttggactcacagtgacttccactttgataatgtcctctctggcatg
atgtctctctttacaatctctacctttgagggctggcctcagttgctgtatagagcaata
gattcacattcggaggatatggggcctatctacaattatcgcattgagattgccgtcttc
ttcattatctacataatccttatagctttttttatgatgaacatctttgtggggtttgtt
attgtcactttccaggaacagggggagcaagagtacaaaaactgtgagcttgacaagaac
cagaggcaatgtgtacagtatgctttaaaggcacgtcctctacgacgatacataccaaag
aatcaacaccagtataagatctggtaccttgttacctcctcatactttgaatatctgatg
tttgcacttatcatgctgaatacaatcagtcttggaatgcagcactatgggcagacagca
gagttcagtcacctgtctgatatccttaacgtggcattcactggaatcttcactgtggaa
atggtacttaaattggcagcatttaaagccaaagggtactttggagatccatggaatgtt
tttgattttttgattgttattgggagtataattgatgtcatcctcagtgagatagataca
ccagaaccagtagtaactccaggctctgaagatacttctcgaatttccatcacatttttt
aggttgtttcgtgtaatgcgccttgtgaagcttctaagccgtggagagggagtcagaact
ctactctggacttttattaaatcctttcaggcacttccatatgtggcactgctcatagta
atgctattttttatctacgctgtcattggaatgcaggtttttggtaaaattgccatggtt
gatggaacgcaaataaatcgcaacaacaactttcagactttccctcaggctgtactagtg
ctctttaggtgtgcaactggggaggcctggcaggaaattcttctggcctgttcttatgga
aagctgtgtgatccaaagtctgatttcctgcctggtgaggaatacacatgtgggaccagc
tttgcatacttctatttcattagtttctacatgctttgtgctttcttgatcatcaacctc
tttgtcgctgtgatcatggataattttgactacctgacccgtgattggtctattctgggg
ccacaccatttggatgagtttaaaaggatctgggcagagtatgaccctgaagccaagggg
cgaatcaagcaccttgatgtagttacactccttcgacgaattcaacctcctcttggtttt
ggaaagttctgtcctcatcgtgtagcttgtaagagattggtcagtatgaatatgccttta
aacagtgatgggacagtaaccttcaatgctactttgttttcccttgtgagaacagcttta
aaaatcaagactgaaggtaattttgaacaaagcaatgaagagttgagaatgataattaag
aaaatttggaaaaggacgagcatgaaattgctagaccaggttataccaccaattggagat
gatgaggtgacagtgggaaagttttatgcaattttcctcatccaagaacattttaggaag
tttaaaaaacgtcaagaagagtattatggttaccggccaaagaaaaataatgtggaaatc
caggctgggttgcgtactgtggaagaggaggtggagccagaaatgcaacgagccatctct
ggtgacttaacagctgaagaggagctggagagagccatggtagaagcggcaattgaggaa
ggcatatatcggaggacaggaggactttttggccaagaagaaaatttcccagaacctgta
agccctgttcacactactatcacaagtcagcggccattgcgtttttctgaagctggaagt
gaggatctagagtcccccgtttttcttccagaccctgtgttttttccacccccacggcga
aaccgcaataccaacaacagtacattatcaaggggactgggagagaggctcactactcca
gaagaagacctgaagcaaaacatttcagaacaatgggatgcctctactaatgcaagccaa
gaggacctaagtgatcacttctccttgtga
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integrated database retrieval system