Xenopus tropicalis (tropical clawed frog): 100486083
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Entry
100486083 CDS
T01011
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04210
Apoptosis
xtr04218
Cellular senescence
xtr04519
Cadherin signaling
xtr04620
Toll-like receptor signaling pathway
xtr04621
NOD-like receptor signaling pathway
xtr04622
RIG-I-like receptor signaling pathway
xtr04623
Cytosolic DNA-sensing pathway
xtr04625
C-type lectin receptor signaling pathway
xtr04920
Adipocytokine signaling pathway
xtr05132
Salmonella infection
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100486083 (nfkb1)
09133 Signaling molecules and interaction
04519 Cadherin signaling
100486083 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
100486083 (nfkb1)
04218 Cellular senescence
100486083 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
100486083 (nfkb1)
04621 NOD-like receptor signaling pathway
100486083 (nfkb1)
04622 RIG-I-like receptor signaling pathway
100486083 (nfkb1)
04623 Cytosolic DNA-sensing pathway
100486083 (nfkb1)
04625 C-type lectin receptor signaling pathway
100486083 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
100486083 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100486083 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
100486083 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100486083 (nfkb1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
100486083 (nfkb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
DUF5018-rel
Motif
Other DBs
NCBI-GeneID:
100486083
NCBI-ProteinID:
XP_002934805
Xenbase:
XB-GENE-985746
UniProt:
F6T195
LinkDB
All DBs
Position
1:complement(73607767..73657787)
Genome browser
AA seq
955 aa
AA seq
DB search
MMAQNIYDIDAHLDTYLPINPLFQEPIYMTSEPNLRSAEGPYIEITEQPKQRGFRFRYVC
EGPSHGGLPGASSEKNKKSYPQIKIHNYVGQVKIIVQLITNSKDIRLHAHSLVGKNCEDG
ICSLTVGPKDTIVGFANLGILHVTKKKVIEILEARMTDAFKKGHNAALLVHPELNYTYSE
DRQLNVREKEIIRQAAMQQAKDIDLSVVRLMFTAFLPDSEGRFTRSLEPVVSVPIFDSKA
PNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDENGGFWEGFGDFSPTD
VHRQFAIVFKTPKYKDVNITKAASVFVQLRRKSDYETSEPKPFLYYPEIKDKEEVQRKRQ
KLMPNFSDGFGGSGAGSGGGGGGLYGGGGAGGSGAGGSYGFSSFSYNNYGGLNFHGGPMN
SSPCMKHESQPQCEANQKHVETMNIQDAPNEVVCLCFDTVQENEEAPAREEREFCKLHDC
NFPRNALQLTKRHAASLFDYAVTGDVRMLLAVQRHLASIQDENGDNILHLSIIHQHSALV
RIFLDITQGPVCDDIINVRNDLYQTPLHLAVITQQPDTVQDIIKAGGDPLCLDRDGNSVL
HLACKEGDASTLSILLKHKKTLEIINLPNNDGLNPIHVAVLSNCVLCLRLLISARADVNA
QEQKSGKSALHLAVEQDNISLAGCLLLEGDACVDNTTYDGNTPLHIAVGRGSTKLTALLK
AAGADSFVENFEPLLRFEDTQDEDDVDEGIVPGTKPLDIATSDEVLEILNGKPYKSEVAP
EDSLPQGDMKNLSGEVKQRLYTLLESRDLDKNWVTLAQKLGLGMLNNAFRLSPHPSKTLL
DNFEVSGGTMTELLDALKLMHYTEAVEAIEQSQAILKLSGTSTPSSEALLPAQRRDSPMF
DVGYLKLQDTDSTCDSGVETSFQKLSLSYSESLKETETVCPKFSQEPDCTLICNK
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgcaaaacatatatgatattgatgctcatctggatacatatttaccaataaac
cctttatttcaagaacctatttatatgacttctgagccaaatcttcgaagtgctgaaggg
ccatacattgaaatcacagagcaaccaaaacagagagggtttcgctttcgatatgtctgt
gaagggccgtcacatggaggacttcctggggcttcgagtgaaaaaaacaaaaagtcatac
ccacagattaagattcataattatgttggtcaagttaagattatagtgcagctgataacc
aatagcaaagacatccgactgcatgcccatagtctagttggtaaaaactgtgaagacggc
atctgttctctaactgtaggacctaaagatacaattgttgggtttgctaacctgggaata
cttcatgttacaaagaagaaagtgattgagattctggaggcccgcatgacagatgccttc
aaaaagggacacaatgctgcattattagtacatccagagctcaattatacatactctgaa
gatagacaattaaatgtgcgggaaaaggaaatcataagacaggcagcaatgcagcaggcc
aaggatatagacctaagtgtggtgcgactcatgttcactgccttcctgccagatagcgaa
ggtcgatttactagatcacttgagcctgtggtatctgttcccatctttgatagcaaagcc
cccaatgcatccaatctgaaaatcgtgcgaatggacaggactgcaggctgtgtgacagga
ggggaagaagtatacctcctgtgtgataaagtgcagaaagacgatattcaagtccgcttc
tatgaagaggatgaaaatggaggcttctgggaaggatttggagatttctcacctactgat
gttcatagacagtttgctattgtcttcaaaaccccaaagtacaaggatgtaaatattaca
aaggcagcgtctgtgtttgttcaacttcggaggaagtcagattacgaaactagtgaaccc
aaaccatttctttactacccagaaataaaagacaaggaggaagtacaaaggaaacgccag
aagcttatgcctaatttctcagatggttttggtggaagtggggcaggatctggtggaggt
ggtggtggtttatatggaggaggaggagcaggaggctctggagcaggtggcagctatggg
ttttcttcatttagctacaataattatggaggtttgaattttcatggaggccctatgaat
tccagcccatgtatgaagcatgagtcccagccccagtgtgaagccaaccagaaacatgtt
gagaccatgaatatccaagatgcccctaatgaagtggtatgtttgtgcttcgacactgtt
caagaaaatgaagaggctccagcaagggaggaaagggagttttgcaaattgcatgactgt
aatttcccaagaaatgctctgcagctcacaaagcgtcatgcagcttccttgtttgactat
gccgtaacaggagatgtgaggatgttattagctgtacagcgccacctagcttcaattcaa
gatgagaatggtgacaacattctccacctgtccattatccaccaacattctgcattagta
aggatcttcctggacataacacaagggcctgtgtgtgacgatatcatcaatgtgagaaat
gacctataccagactccgttgcatttggctgtgatcacacaacaacctgacactgtgcaa
gatatcataaaagctggaggtgacccgttgtgcttggaccgtgatggcaactccgtccta
catctggcttgtaaagaaggagatgcctcaacattaagtatactgctcaaacacaaaaag
acactggagatcatcaatcttccaaacaatgatggtttgaatccaatccatgttgctgta
ctttcaaattgtgtgctgtgcctccggctactgatatcagccagggcagatgtaaacgct
caagaacagaaatcaggaaaaagtgcattgcatttggcggtggaacaagacaacatatct
ctagctggctgtcttcttctggagggagatgcgtgtgttgacaatactacatatgatggc
aatacaccgcttcacatagcagttggaagaggctctaccaagcttacagcacttctcaaa
gccgcaggtgcagattcctttgttgagaactttgaacccctcttaagatttgaagatact
caagatgaagatgatgtagatgaaggaattgtaccgggcacaaaacctctggacatagct
actagtgatgaggttcttgaaattctgaatggcaagccttacaagtcagaagtggctcct
gaagactccttgccacaaggtgacatgaaaaaccttagtggagaggtaaagcagaggctg
tacaccttgttagaaagccgagatttggacaagaactgggtcactttagcacagaagctg
ggccttggaatgctgaacaatgctttcagattaagcccccacccatctaaaacattactg
gacaactttgaggtttctggtggaaccatgacagaactcctggatgccttaaaactgatg
cattacactgaagctgttgaggccattgagcagtcacaagctatccttaagctgtctggg
acttctacgccatcttcagaggcactgcttcctgcacagagaagagattcccccatgttc
gatgttggttaccttaagctgcaggacactgatagtacgtgcgacagtggcgtagagaca
tcctttcagaaactgagcctttcatattcggaatctctgaaggagacagagacagtttgc
ccaaagttttcccaggaaccagactgtactctcatctgcaacaagtga
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