Xenopus tropicalis (tropical clawed frog): 100486750
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Entry
100486750 CDS
T01011
Symbol
scn2a
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100486750 (scn2a)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100486750 (scn2a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
100486750
NCBI-ProteinID:
XP_031749251
Xenbase:
XB-GENE-6447552
UniProt:
A0A8J1IXM1
LinkDB
All DBs
Position
9:complement(70262924..70424041)
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AA seq
1790 aa
AA seq
DB search
MLIMCTILTNCVFMTLSNPPEWTKNVEYTFTGIYTLESLIKILARGFCLEKFTFLRDPWN
WLDFSVIVLAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGHLRNKCLLWPYNSSVDISLYEHFNESLFYKLENQKDPLVC
GNSSDTGKCPEGYVCVKAGRNPNYGYTSFDTFNWAFLSLFRLMTQDCWENLYQLTLRAAG
KTYMIFFVLVIFLGSFYLVNLILAVVAMAYEEQNQATIEEAVQKEAEFQRLKKQQEEAQA
LAAAVADVFGESQELSEEVGLEDASECSSTVSKLSSKSAKERRNWRKQRKQSLLSIQGPV
FSPRRNSKTSIFSFKDRAKDVGSENDFADDERSTFEEDSRRDPLFVPGRHRARRNSNISQ
TSRSSRILPLLSMNGKMHSTVDCNGVVSLVGGSSAPIGLFPEGTTTETDRKRRPSSYKIS
MDLMEDPSLRQRAQSIASILTNTMEELQESRRKCPSCWYKFANCFLIWDCCEAWLKVKRI
VKLIVMDPFVDLAITISIVLNTIFMAVEHAHMTPYFISVLTTGNQVFTGIFTAEMVLKLI
ALDPYYYFQEGWNIFDGLIVSLSLMELGLSSTGGFSVLRSFRLLRVFKLAKSWPTLNKLI
KIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIAENCELPRWHMNDFFHS
FLIVFRVLCGEWIETMWDCMEVAGQSMCLLVFMLVMVIGNLVVLNLFLALLLSSFSSDNL
SATDEDSEINNIQIAVGRIQRGVASGKIILREFFEKLFLQKQKDINETKQLEETPGKNDT
CVLGNAVVEILKEKNDVRDSDGMTSEIGSSVEKSAENEKEYMTVINKTSLTVAVPIAPGE
SDFENPNTEEFSSESDPEETKEKIKVSSSSEGSTIDIRAPGVERIEEFLDYEYEETFDPE
PCFTDDCVASFTCCQINIENGTGRDWWNLRKTCYTIVEHSWFESFIIFMILLSSGALAFE
DIYVEQRRNVKAILEYADKVFAYIFIMEMLLKWVAYGFIKYFTNAWCWLDFIIVDISLVS
LIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFW
LIFSIMGVNLFAGKFYYCVNTTSGVPFPATDVNNYSDCRMYINTTGAARWKNVKVNFDNV
GAGYLALLQVATFKGWMPIMYAAVDSREINEQPKYENNTTMYLYFVAFIIFGSFFTLNLF
IGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANCCQGLIFDFV
TKQAFDIIIMILIFLNMVTMMIETDDQSQEMEMYLYRINAVFIILFTGEFLLKLISLRQY
YFTIGWNIFDLVVVILSIVGMFLADIIERYFFSPTLFRVIRLARIGRILRLIKAAKGIRT
LLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKQSGIDDMFNFETFGNSMICLF
QITTSAGWDLLLEPILNSGEPDCDPNAEHPGSLFKGDCGNPSVGIFFFVSYIIISFLIVV
NMYIAVILENFSVATEESAEPLGEDDFEMFYEVWEKFDPSASQFIEYSKLSDFADALDPP
LRVPKPNNIQLIAMDLPMVSGDRIHCLDILFAFTKRVLGEGGEMDSLRQPMEERFMTSNP
SKVPYEPITTTLRRKQEEQSAVVIQRCYRRFRLKKRQASQTYKGNRNKQIEEIERNVNKS
QQRYTTEISDTSTSTMSPPSYDSVEKTQQEKYEKDRQKKKISLKTQNDVH
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgcttattatgtgcactatactgaccaactgcgtctttatgaccttgagtaatcctcca
gaatggaccaagaatgtagagtacacattcactgggatctatacattagaatcattgata
aagatccttgcaaggggattctgtttagagaaatttacttttctacgtgacccttggaac
tggcttgatttcagcgtgattgtgttggcgtatgtaacagaatttgtaaacctaggcaat
gtttcagctcttcgaactttcagagtattgagagctttgaaaactatttctgtaattcca
ggtctaaaaactatcgtgggcgcactgattcagtcggtgaagaagctttcggatgtcatg
attctcacagtgttttgcctcagtgtgtttgcactaatagggctacagcttttcatgggg
cacctgaggaataagtgtttgttgtggccttacaactcttctgtagatatcagtctatac
gagcatttcaatgaaagtctgttttataaattagaaaatcagaaggaccctttggtttgt
ggtaatagctcagatactggtaagtgcccagaaggttacgtctgtgtgaaagctggaagg
aatcccaattacggctatacaagctttgacacattcaactgggctttcttatcactgttt
cgcctgatgactcaagactgctgggaaaatctttatcagctgacactacgagctgctggt
aaaacctacatgatcttttttgtgctggtgattttcctgggttctttctacttggtaaac
ttaatcttggctgtggtggccatggcttatgaagagcagaaccaggctaccatagaagaa
gctgtacagaaagaggcagaatttcaaaggttgaaaaaacagcaagaggaagctcaggca
ttggcagcagcagttgcagatgtgtttggagagtcacaagaattaagtgaggaagttggt
ctggaagacgcgtctgagtgctcctcaactgtatccaagctgagctctaagagcgctaaa
gagcggaggaactggaggaagcaaagaaaacagtcacttctgagtatccaaggccccgtg
ttttccccaaggcgcaacagcaaaacaagcatcttcagcttcaaagatcgggcaaaggac
gtggggtcagagaatgattttgctgatgatgaacgcagcacttttgaagaggacagcaga
agggaccctctctttgtgcctggaagacacagagcccgacgtaatagtaacattagtcaa
actagcagatcatctaggattttgcctttgctgtcgatgaatgggaaaatgcatagcaca
gtggactgcaatggagtagtctccctggtgggtggatcaagtgctcctattgggctcttt
ccagagggcaccacaacagagacagacagaaaaagaaggccaagctcctacaagatctct
atggatttaatggaagatccatcattaagacaaagagcccagagtatagctagtatacta
acaaacacaatggaagagctacaagaatctaggcggaaatgcccttcttgttggtacaag
tttgctaattgtttcttgatctgggactgctgcgaagcttggttgaaagttaaacggatt
gttaaattgattgtgatggatcccttcgttgaccttgctatcacaatctctattgtttta
aacacaatattcatggctgtagaacacgcccacatgactccatactttattagtgtgctc
accactgggaatcaggttttcactggaatatttacagctgaaatggttttaaagctcatt
gctctggacccatactattattttcaagagggttggaatatttttgatggtctcattgtg
agccttagtttaatggaacttggactttccagtactggcggattttcggttcttcgctct
tttagactgctccgtgttttcaagttggcaaaatcctggcctacactgaataagctgata
aagataattggcaattctgtaggcgctttgggaaacctgactctggtgttggctatcatc
gtctttatttttgccgtggttgggatgcagctgtttggtaaaagttacaaggaatgtgtc
tgcaaaattgcagaaaactgtgagcttcctcgctggcatatgaacgacttcttccactcc
ttccttattgtgttccgagttttgtgtggggaatggattgaaaccatgtgggactgtatg
gaggttgcaggacaatctatgtgccttcttgtatttatgctggtgatggtgattggaaat
ttagtggtgctgaatctgttcttggccttgctcctcagctcttttagctcagacaattta
tctgctactgatgaagacagtgaaataaacaatattcagattgcagtgggcaggatacag
aggggggtagccagtggtaaaataattttgcgtgaattttttgaaaaactattcctccaa
aaacaaaaagatataaatgaaacaaaacagctagaagaaacccctggaaagaatgacact
tgtgtgcttggcaatgcggtggtggagatattaaaggaaaagaatgatgttagagacagt
gatggaatgacaagcgagattggaagcagtgtggagaaaagtgcagaaaatgagaaggaa
tacatgacagttatcaacaaaacctccctcactgtagctgtgcctattgctcctggggaa
tcagattttgaaaatccaaacactgaagaattcagcagtgaatctgatcctgaagaaaca
aaagagaagataaaggtttctagctcctccgaagggagtacaatcgatattagagcccca
ggagtggaaagaatagaagagttcttggactatgagtacgaggagacatttgatccagag
ccatgttttacagatgattgtgttgcgagcttcacatgttgccagattaacatagagaat
ggaactggaagagattggtggaatctcagaaaaacctgttacaccattgttgagcacagt
tggtttgaatcatttattatttttatgattcttctcagcagtggggcactggcgtttgaa
gacatttatgttgaacaacggagaaatgtgaaagcgatactggaatacgcagacaaggtt
ttcgcctacatctttataatggaaatgcttctgaaatgggtggcgtacggcttcataaag
tatttcaccaatgcctggtgctggcttgatttcataatcgtagatatttccttggttagc
cttatagccaatgccttgggctactcagagttaggtgccattaagtcacttaggacacta
agagccttgagacccctgagggccctctcacggtttgaagggatgagggtagttgtgaac
gccctgattggagctattccatctattatgaatgtgcttctcgtttgccttatattctgg
ctcatcttcagcatcatgggagtaaatttgtttgccggcaagttctactactgtgttaat
actacaagtggtgtaccgttccctgctacagatgttaacaattactctgattgccgcatg
tatattaataccactggtgctgccagatggaaaaatgtaaaagtgaacttcgacaatgtg
ggtgctgggtatcttgccttgcttcaagtggctacctttaaaggatggatgcctattatg
tatgcagcagtggattccagagagataaatgaacagcccaaatacgaaaacaatacaacc
atgtacctgtattttgtagcctttatcatttttgggtcattcttcaccttgaatctcttc
attggtgtaatcattgataacttcaaccaacagaagaagaagctagggggccaagatatc
ttcatgacagaggaacaaaaaaagtattataacgctatgaaaaaactgggctccaaaaag
cctcagaaacccattccaaggcctgcgaattgttgccagggattgatctttgattttgta
acaaaacaagcgtttgacatcatcatcatgatccttatctttctcaacatggtaacaatg
atgattgaaacagatgaccagagtcaagagatggaaatgtacttatacaggatcaatgct
gtcttcatcatccttttcacgggagagtttctccttaaactaatttctttgcgacagtat
tactttactattggctggaacatttttgacctggttgtcgtcatcctttctatagttggt
atgtttctggcagacattattgaaaggtattttttttccccaacattattcagagtcata
cggcttgccaggattggaaggatcttacgcctcattaaagcggcaaaggggatacgtact
ctgctgtttgcattaatgatgtcacttcctgctttatttaatattggcctcctgcttttc
cttgttatgtttatatatgccatctttggaatgtccaattttgcctatgtgaaaaagcag
tcgggcattgatgatatgttcaactttgaaaccttcggcaacagtatgatctgtttgttt
caaatcacaacatctgctggttgggatcttttgttagaaccaattctcaatagtggggag
ccagactgtgacccaaacgctgaacacccaggaagcctttttaaaggcgattgtggaaac
ccatctgttgggatattcttctttgttagttacatcattatatcatttcttattgtggta
aacatgtacattgctgttattcttgaaaactttagcgttgctactgaagagagtgcagag
ccattgggagaggatgattttgaaatgttttatgaggtttgggaaaaatttgacccatct
gcttcacagtttattgagtacagtaagttgtctgactttgcagatgcactagacccacct
ctccgcgtaccaaagccaaataatatacaacttattgctatggatcttcccatggtaagt
ggagacagaatacactgtcttgacatactctttgcctttacaaagcgtgtcttgggtgaa
ggcggagaaatggattctcttcgtcaaccaatggaagaacgctttatgacatcaaatcca
tcaaaggtcccctatgaaccaatcacaaccaccttgcgacgtaagcaagaggagcaatct
gctgtagtaatccaacgttgttaccgtcgtttcaggttgaaaaagaggcaagcatctcag
acttacaagggaaacagaaataaacaaattgaagaaattgaaagaaatgttaataaaagc
caacagcgttacacaacagaaatatcagatacatccacctcaacaatgtccccgccgtcc
tatgacagtgtagagaagacgcaacaagaaaaatatgaaaaagacaggcagaaaaagaag
atatcactaaagacccaaaatgatgtacattga
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integrated database retrieval system
