Xenopus tropicalis (tropical clawed frog): 100487208
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Entry
100487208 CDS
T01011
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
100487208 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100487208 (trpv1)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100487208 (trpv1)
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GFIT
Motif
Pfam:
Ank
Ank_2
Ank_3
Ank_5
Ank_4
Ion_trans
RPN2_N
Herpes_UL43
COX14
Motif
Other DBs
NCBI-GeneID:
100487208
NCBI-ProteinID:
NP_001243521
Xenbase:
XB-GENE-991320
UniProt:
H3K2J6
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Position
2:complement(30588935..30619749)
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AA seq
840 aa
AA seq
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MKMKKMGSSTDIDETEETCASVETDESHSDDTNRSTQENRKKLKFCQAKYSIFSSPKPKG
RRFGKAETDRNIAPMDSVYQIESKVMSPTIKFQRNLEKGKLCNQLVRQSSSLESTTSCKD
RTFKLYDQRRIFDAAAYGDCDELDDLLVYLLRTHKKLTNEEFKEKETGKTCLLKAMLNLE
NGMNSTIPLFLEIAEKTDNIKEFINSAYRDNYYRGQTALHIAIERRNMDLVELLLQHGAD
VHARADGEFFRKAKGKAGFYFGELPLSLAACTNQTAMVQYLLQNQYSPANMAAKDTFGNT
VLHALVDIADNTQENTTFVTKMYNEILVLGAQIRPSLKLEEIMNKKGLTPLSLAAKTGKI
GVFAYILRREIKNFECRHLSRKFTEWAYGPVHSSLYDLSGVDTYEKNSVLEIIAYSSETP
NRHEMLLVEPLNKLLQDKWDRFVKRIFYFNFLAYITYVIIFTVAAYYRPVDGSPPFPVQP
NSYLRTCGELITVIGGIYFFFRGIQYFTQRRPSLKALIADSYYEFLFFAQSIFLLLSTIL
YFCGRNEYVAFLVICLAMSWANVLYYTRGFQLMGIYSVMIEKLILSDMVRFMFVYLLFLF
GFAAALVTLIEDGEGRTDLNSTCGRRCCKPEPASYNNLYYTCQELFKFAIGMGDLEFTDN
YKYKPVFIFLLITYVILTYILLLNMLIALMGETVSKVAQESKSIWKLQRAITILDIEKSF
LNSFRDTFRSGKSVLVGFTPDGKEDYRWCFRVDEVNWNKWNSNLGIIKEDPGNCHGLKST
LSASFRPRGKRWKSLVPHVKETNVKIDNETVPEEIPLQQKPTLADQTVPEEDQEVTSKAE
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaagaaaatgggaagttccacggatattgatgaaactgaagagacttgtgca
tctgttgaaactgacgaatcccacagtgatgacaccaatcgcagcacgcaggagaacaga
aagaagctaaagttttgccaggcaaagtattcaatctttagctcacccaaaccaaagggc
cgtcgctttgggaaggcagagacagatcgtaatatcgctcctatggactctgtgtaccag
atagaaagtaaagtgatgtctccaacaattaagtttcaacgcaatctggaaaagggaaaa
ttatgtaatcagctggtcaggcaaagttcatctttggaatccacaacgagctgcaaggac
agaacgtttaaactgtacgaccagagaaggatttttgatgcagctgcctatggtgactgt
gatgaactggatgatctcctggtttatctgcttaggacgcataaaaagctcaccaatgaa
gagtttaaagagaaagagacggggaaaacctgcctgctgaaagccatgctcaatttggaa
aacgggatgaacagcacaatcccattgtttctggaaattgcagaaaaaacagataatata
aaagaattcataaattcagcttatagagacaactactacaggggtcagacagccctgcat
attgccattgaaagaaggaatatggatctggttgagcttttattgcagcatggagctgac
gtccatgccagggcggatggggaattcttcagaaaagccaaaggaaaagccggtttctat
ttcggggagctgcctctgtccctggcagcatgcaccaatcagacagctatggtccagtac
ctcttacagaaccagtactctccagccaatatggcagccaaagacacatttggaaacaca
gtactgcacgccctggtagacattgccgacaacactcaggagaacacgacttttgtgacc
aaaatgtacaatgagatactggtgttgggggctcagataaggccttcattgaagctggag
gaaattatgaataaaaagggcctcacccctttgtccttggcagcaaaaacaggcaagatt
ggggtttttgcctatattctgaggagagaaattaagaatttcgagtgcagacatctttct
cggaaattcacagaatgggcatacgggccggtgcattcctccctctatgatttatcagga
gtagatacctatgagaagaactctgtgcttgaaatcattgcctacagcagtgagacgccg
aatcgccacgagatgctgttggtggagcctcttaacaaactgttacaagacaaatgggac
cgatttgttaagcgaatattttactttaacttcttggcttacattacatacgttatcatc
tttaccgtagctgcctactacagacctgttgatggaagtcctccattcccagtacagcct
aacagctatctccgcacctgtggcgagctaatcaccgttattggaggaatctatttcttt
ttcagaggtatccagtattttacacagagacgtccatccctgaaggctttgattgctgac
agctactatgaatttctgttctttgcccagtctatattcctcctcttatccaccatacta
tacttctgtggaagaaatgaatatgtggccttcttggtgatctgtttagcaatgagctgg
gccaatgtgctgtactacacgaggggctttcagctaatgggcatatattctgttatgata
gagaagttaattctaagcgacatggtccggtttatgtttgtctaccttttgttccttttt
ggatttgcagcagctctggtgaccctcattgaagatggagagggcagaacagacctcaat
agtacatgtggaaggcgctgctgcaaacccgagcctgcttcttacaacaacctctactac
acctgccaggaactctttaagtttgccattggaatgggagatctggaatttacagacaac
tacaaatacaagcccgtgttcatcttcctgctgatcacatatgtcattctaacatacatc
ctcctgctcaatatgttaatagcgctgatgggggaaacagtaagcaaggtcgctcaggaa
agtaaaagtatctggaagcttcagagagcaattaccatactggacattgagaagagcttt
ctgaactccttcagagacacattcagatcaggaaagtcagtccttgtaggatttactcct
gatggcaaagaggattacagatggtgctttagagtcgatgaagtgaattggaacaaatgg
aactcaaatttaggaataatcaaggaggacccagggaactgccatggattaaaaagcacc
ctcagtgcttcatttcgacctagagggaaaagatggaagtcattggtcccacacgtaaaa
gaaacaaatgtgaaaatcgacaatgaaaccgtaccggaggaaataccgttacagcaaaaa
cctactttggcagatcagactgtgccagaagaagatcaggaagtgacatccaaggcagag
tga
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