Xenopus tropicalis (tropical clawed frog): 100496200
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Entry
100496200 CDS
T01011
Symbol
cngb1
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
100496200 (cngb1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100496200 (cngb1)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
100496200 (cngb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
100496200
NCBI-ProteinID:
XP_031757189
Xenbase:
XB-GENE-980342
UniProt:
A0A8J1JH40
LinkDB
All DBs
Position
4:75922092..75989461
Genome browser
AA seq
1922 aa
AA seq
DB search
MFSWIEKVIPQPPDTPRRTSAEAQGGCQASESTQQKCDEKETCVKKEADNPPDVVKTQEE
EQESDKGAAGVLTWLSQGLGRVIPQPVESPTLSRANKESTVPAVVEQKEVPASETVEKPT
EINPTDHMESTPAGVLSWLSQGLEKVVPQPSRTLKSGTSGGSEGGAVTVELPPPREEKSI
VIEEPKISPPTPVHTPASVPVPESQPTIIEVQPATSSEPEVTATDKGSGAGVLGWLMQGL
GKVVPQPENVAPLATKVEEEKPKEEEEEKPVPLPQKESKRSSDTGVFSWITQGIEKVIPQ
PSVIAKQDSQTITLCPVEEICILPTSPEDNLLVEDLETVNSHADETEEQCLAQAPAPIDT
EEGRAPTNGLEEMCRSTSKPECREDDLKTTDKIQTFSEESQIYKDSVQACIAEGAKMELL
IMSENNETDPVTGESPVKLLEDGTSLDTELQAAEGKLQVNEKVTQNGQDKVYMRGTNQEL
AEKGCQQTKETHTQSEKNGHLDIGQCLNKKQDQCVEGWENQDKENETKEAKIGSKNARDV
KTDNEDGHWQDKAKGKVAHNRLSLEETIIIKQTQQMIIKSQSLELTQIQPSEEQQNKPDT
VADMADTKERAQELKKTQCLNERDPQPEVETESRMELQRQLTEDMSFQFYGCEDIQQALW
DEQNQQEDIKKQSFCEIQSEKELKEAQYDIDKMPTAEEDLHKTAEETDPREKINGQLMKD
TILSRENIEHNDSGDRFDEKIKKIDIDIQPIEKEQRQLSIDMKTDAQLDEERHVQTEERH
TQTEDPVCQTAEERQLSYDEDQIQTEERETQTDERFSPPVQKKSEHENVISQHAELVYPD
KDAPYKKNECQEIYEVPQHNFIESKHEASESQLTEQQSQDQEFQNDKKEAQLEEVNQNLE
RAMQNEKKMCLSEKTENQTEEEDKSNEEKKYIQSEEEKNIEKEIFPKPGEQSVTEHVNQT
DEERTVQSSVEIQIHYSQKRDSLEQQKIQIEEEVMNEVLRKDQNIIPEIDSNYDRNHEKE
VALTPEAISSDQVKKELEDKDLVPVEEASHIETECSHEVMQYGDLTCDSALTTLLKSDDQ
KEEKGVEKEVLESENERLSWITEEDEDETELQVSYYQSESEEEIKVSHEVILEAPPEYLD
TSVVVATQAVEETNYLKQFPVQIAGTLSLPEPDGGPFMHPAVSVEDVDSGSITDALEHED
FVRPPPSPCKHRTLTVPVTSLPAKSRKRTQSQEDIMEEMSDAAPEDEEVMERSASAISHS
SAIITERLQELVRMFKDRTERVKEKLIDPELSSEDESPSASPSKKSAPPPPPPPPPAEEK
KVEVEAQAEEEHYCEMLCCKFKTRPWRDRLLKLKFPSSIDPLTNVMYVLWLFFVVLAWNW
NCWLIPVRWAFPYQTPSNIHYWLLMDYLCDLIYLLDITVFQSRLQFVRGGDIITNKKDMR
EHYFKSERFKMDLISLLPLDLLYLKFGVKSLLRLPRILKYMAFFEFNNRLEAILSKAYIY
RVIRTTAYLLYCLHMNACLYYWASDYEGLSSTPWVFDGVGNSYIRCYYWAVKTLITIGGL
PDPDTLFELWFQLLNYFMGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTIKYMNCYKI
PRSVQNRVKMWYEYTWQSQGMLDESELMVQLPDKMRLDLAIDVNYSIVSKVILFQGCDRQ
MIYDMLKRLRSVVYLPGDYVCKKGEIGREMYIIKAGQVQVLGGPDGKTVLVSLKAGSVFG
EISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEILLHYPESQKLLRKKAKKMLKNSSK
PKDEPGQEKGFLHIIPPRPETPKLLKAAIAATEKMGFKGFSKLRRRMKVKTTIEPTTSSP
VPPGSPVHRRSPVPQIKPDDDDTTEIVSESADNTVFIRVSPSPRGDEQILSVEVTAPEDE
TK
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctggattgagaaagttatcccccagcctcctgacacaccaagaagaacatct
gctgaggcccaagggggctgccaagcttctgaaagcacccagcagaagtgtgatgagaag
gaaacatgtgtgaaaaaggaggctgacaaccctccagatgtagtaaaaactcaagaagag
gagcaagagtctgacaaaggggccgcaggagtactcacttggctgtcacagggtttagga
agagtaatcccgcaacctgttgagagcccaacactttctcgtgcaaacaaggaaagtaca
gtgccagcagtggtggagcagaaagaggtacctgcgagtgagacagtggaaaaaccaaca
gagatcaatcctacagaccacatggaaagtacaccagcaggggtcctctcctggttgtct
cagggcttggaaaaagtggttcctcaaccttcaagaacactaaagtcagggaccagtgga
ggatcggagggtggtgcagttactgtagaactgccaccaccaagggaagaaaaaagcata
gtcatagaagagccaaagatttctcctccaacaccagtacatactcctgcctcagttcca
gtgccagagtcccaacccaccattattgaggtgcagccagcaaccagctcagaaccagag
gtcacagcaacagacaaagggtcaggggctggagttctggggtggctcatgcagggccta
gggaaagtcgtaccgcagccagagaatgtcgctccactcgctactaaagtagaggaagag
aaacccaaggaggaagaagaggagaagccagtgccattgccccagaaagaatccaagaga
agcagtgacacaggggttttcagctggatcacccaaggtatagagaaggtcattccccag
ccatcagtcatagcaaagcaggattctcagaccatcaccctttgcccagtggaggaaatt
tgtattctgcctaccagccctgaggataatctgcttgtggaagacttagaaactgtgaat
agccatgcagatgaaacagaagaacagtgcttagcccaagccccagcaccaatagatact
gaagaagggagagctccaaccaatggcctagaagaaatgtgcagaagtaccagcaaacca
gagtgtagagaagatgatttgaaaaccacagacaagatccaaacctttagtgaagaaagt
cagatttacaaagattctgttcaggcatgcattgcagagggtgcaaaaatggaactatta
attatgtctgaaaataatgaaactgatcctgttactggagaaagtccagttaagctttta
gaggatgggacgtctctggatactgagttacaagcagcagaaggaaaattacaagtaaat
gaaaaagtgacacaaaatggacaggataaggtatatatgagaggaacaaaccaggaactt
gctgaaaaaggatgccagcaaactaaagaaacacacacacagtctgagaagaacggacat
cttgacataggccaatgtttaaacaagaagcaggatcaatgtgtagaaggatgggaaaac
caggataaagaaaatgaaacgaaggaggcaaaaattggcagcaaaaatgcaagagatgta
aaaactgataatgaagatggccactggcaagataaagctaaaggaaaagttgcacataac
agacttagtctggaagaaactataattatcaaacaaacacaacaaatgattattaagagc
cagtcactagaactaacacaaatacaaccatctgaagaacaacaaaataaaccagacacg
gttgcagatatggcagatacaaaggagagagcacaagagcttaaaaagacccaatgtttg
aatgaaagagatcctcagcctgaagtggagactgaatctagaatggagttacaacgccag
ttaacagaagacatgtcttttcaattttatgggtgtgaagacattcagcaagctctttgg
gatgaacaaaatcagcaagaggacattaaaaaacagagcttctgtgaaattcaatcagaa
aaagagttaaaggaagcccaatatgatatagacaaaatgcctacagccgaggaagacttg
cacaaaactgcagaagaaacagacccaagggagaaaataaatggacaactaatgaaggat
acaatactgagcagggaaaacattgaacataatgattcaggagacagatttgatgaaaaa
ataaaaaagatagacattgacattcaacccatagaaaaggaacagagacagctaagcata
gacatgaagactgatgcccaacttgatgaggagagacatgttcagactgaggagcgtcat
acacaaactgaagacccagtttgtcagactgcagaagagagacagttatcttatgatgag
gatcagatacaaactgaggagagagagacccaaactgatgaaaggttcagtccaccagta
caaaaaaaatctgagcatgaaaatgtaatttctcaacatgcagagctagtgtatcccgat
aaagacgccccttataaaaagaatgagtgccaggaaatatatgaagtgccccagcataat
tttatagagtctaaacatgaagcatcagaatctcagcttactgagcaacagtctcaggat
caagagttccaaaatgataagaaagaggctcaacttgaagaagtgaatcagaatttagaa
agagcaatgcagaatgagaagaaaatgtgccttagtgagaagacagaaaaccaaaccgag
gaagaggataaaagcaatgaagaaaagaaatatattcagtctgaagaggagaaaaatatt
gaaaaagaaatatttccgaaaccaggagagcagtcagtcactgaacatgttaatcaaaca
gatgaagagagaacagttcagtcctcagtggaaatacaaatccattactcacagaaaaga
gattcccttgaacagcaaaagattcaaattgaagaggaagtaatgaatgaagtgctgagg
aaagaccaaaatattattcctgagattgattcaaattatgacagaaatcatgaaaaagag
gttgccttgactcctgaagccataagttctgatcaagtcaagaaagaattagaagacaaa
gatcttgtcccagtggaggaagcgtcacacatagaaacagaatgttcccatgaagtgatg
caatatggagacctaacatgtgactctgctctaaccaccctcctaaaatccgatgaccaa
aaagaagaaaaaggggtagagaaggaagtgttggaatctgaaaatgagcgcctctcctgg
atcacagaagaagatgaagacgagactgagctccaggtatcatattatcaaagcgaaagt
gaagaggaaatcaaggtgtcacacgaggtgattctggaggctccacctgaatatctggac
acctcagttgttgtagctacacaagctgtggaggagaccaattatttaaagcagttccca
gtgcagatagcaggcactttgtcattgccagaacctgatgggggtccctttatgcatcca
gcagtcagtgttgaagatgtggactctggtagcattacggatgctctggaacatgaagac
tttgtgaggcctcctccgtcaccatgcaaacataggactcttacagtgcctgtcacttct
ttgcctgctaaaagtaggaagaggacacaatcccaggaagacatcatggaggagatgtct
gatgctgcaccagaggatgaagaggttatggaaagatctgcttcagcaatcagtcacagt
agcgcaataataacagagcgcctgcaggaactggttcgcatgtttaaggaccggacagaa
cgtgtgaaagagaaactgattgatccagaactgtcttctgaagatgaaagtccatctgct
tctccatccaaaaaaagtgcacctcccccacctcctccacccccaccagctgaagagaag
aaggtagaagttgaagcccaggcagaagaggaacattactgtgaaatgctatgttgcaag
tttaagaccaggccgtggcgtgaccgtctcctgaaactcaaatttccatccagcattgac
cctctgactaatgttatgtatgtgttgtggctattttttgtcgtattggcgtggaactgg
aactgctggctaatccctgtgcgctgggctttcccataccaaactcctagcaacatccat
tactggctgctcatggattacctgtgcgaccttatctacctactagacattactgtgttc
cagagcaggctacagtttgtccgaggaggcgacatcattacaaataagaaagatatgcgt
gagcattacttcaagtctgaacggtttaagatggatctcatttctctccttccattggac
cttctttatttgaaatttggcgtcaagtctttattgagattgccacgtattttaaagtac
atggctttctttgaatttaacaatcgtctagaagcaatcctgagcaaagcttacatctac
agggtgattcgaaccactgcttaccttctctactgccttcatatgaatgcctgtctatac
tattgggcctctgactatgagggtctgagctccaccccatgggtctttgatggtgtaggg
aacagttatatccgatgctactactgggctgtgaagaccttgataaccattggaggactt
cctgacccagacacactttttgaactctggtttcagctactaaattacttcatgggtgtg
tttgccttttccgtcatgattggtcagatgagagatgtggttggggcagcgacagcagga
cagacatattaccgcagctgtatggacagtactattaaatacatgaactgttacaaaatt
cctcgaagtgtgcaaaaccgtgtcaagatgtggtatgagtacacatggcaatcccagggc
atgcttgatgaatcagaactcatggttcagcttcctgataagatgagattggaccttgct
atcgatgtcaattacagtattgtgagcaaagtaatactgtttcaggggtgcgacaggcag
atgatttatgatatgctgaagagactgcgctctgtggtttacttaccaggagattatgtc
tgtaaaaagggggaaattggaagggaaatgtatattatcaaagccggacaagtccaggtg
ctaggaggacctgatggcaaaactgtacttgtctctttaaaagcagggtctgtgtttgga
gaaatcagtcttctcgctgtgggaggtggaaacagacggacagcaaatgtagttgctcac
ggatttaccaaccttttcattttggataaaaaagacctaaatgaaattttacttcattat
cctgaatcccagaagctgttgcgcaagaaagcaaaaaaaatgttgaagaacagcagcaag
ccaaaagatgagcctggtcaagaaaaaggatttttgcatatcatccccccaagaccagag
accccaaaactcctgaaggctgcgattgccgccactgaaaaaatgggttttaaaggattt
tccaaactaaggcgccgaatgaaagtgaagacaactatagagcccaccacgagcagtcct
gttccccccggctcacctgtgcacaggcgatccccagttccccagatcaagcctgatgat
gacgacactactgaaattgtatctgagtctgcagacaacaccgtgtttatacgggtcagc
ccatcaccgcggggtgatgaacagatcctttctgtggaagtgacagctccagaggatgaa
actaaataa
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